Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA   Type   Machinery gene
Locus tag   LPB400_RS08790 Genome accession   NZ_CP079818
Coordinates   1834165..1835541 (+) Length   458 a.a.
NCBI ID   WP_070843275.1    Uniprot ID   -
Organism   Neisseria perflava strain LPB0400     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1829165..1840541
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LPB400_RS08770 (LPB400_08780) - 1829189..1829737 (-) 549 WP_049322876.1 YqgE/AlgH family protein -
  LPB400_RS08775 (LPB400_08785) - 1829767..1830312 (-) 546 WP_070843272.1 CreA family protein -
  LPB400_RS08780 (LPB400_08790) - 1830486..1832381 (+) 1896 WP_107791954.1 peptidoglycan DD-metalloendopeptidase family protein -
  LPB400_RS08785 (LPB400_08795) - 1832597..1834069 (+) 1473 WP_036490379.1 S41 family peptidase -
  LPB400_RS08790 (LPB400_08800) radA 1834165..1835541 (+) 1377 WP_070843275.1 DNA repair protein RadA Machinery gene
  LPB400_RS08795 (LPB400_08805) - 1835692..1836498 (+) 807 WP_070843276.1 DUF4198 domain-containing protein -
  LPB400_RS08800 (LPB400_08810) - 1836554..1837114 (-) 561 WP_070813833.1 pseudouridine synthase -
  LPB400_RS08810 (LPB400_08820) - 1837486..1837998 (+) 513 WP_225905469.1 hypothetical protein -
  LPB400_RS08815 (LPB400_08825) - 1838051..1838668 (+) 618 WP_070813832.1 4'-phosphopantetheinyl transferase superfamily protein -

Sequence

Protein


Download         Length: 458 a.a.        Molecular weight: 49316.75 Da        Isoelectric Point: 7.0601

>NTDB_id=589657 LPB400_RS08790 WP_070843275.1 1834165..1835541(+) (radA) [Neisseria perflava strain LPB0400]
MAKAPKTIYQCSECGGTSPKWQGKCPHCGEWNTLQESLAAPEPKNARFQSWAADTSTVQSLSAVTATEVPRNPTGMGELD
RVLGGGLVDGAVILLGGDPGIGKSTLLLQTIAKMAQSRKVLYVSGEESAQQVALRAQRLELPTEGVNLLAEIRMEAIQTA
LKQHQPEVVVIDSIQTMYSDQITSAPGSVSQVRECAAQLTRMAKQMGIAMILVGHVTKDGAIAGPRVLEHMVDTVLYFEG
DQHSNYRMIRAIKNRFGAANELGVFAMTENGLKGVSNPSAIFLASYRDDTPGSCVLVTQEGSRPLLIEIQALVDDAHGFT
PKRLTVGLEQNRLAMLLAVLNRHGGIACFDQDVFLNAVGGVKIGEPAADLAVILAMLSSFRNRPMPEKTVVFGEIGLSGE
VRPVARGQERLKEAEKLGFKRAIVPKANMPRNAKEFPNLKIYGVSSLQEAIDVCRDGD

Nucleotide


Download         Length: 1377 bp        

>NTDB_id=589657 LPB400_RS08790 WP_070843275.1 1834165..1835541(+) (radA) [Neisseria perflava strain LPB0400]
ATGGCAAAAGCCCCCAAAACCATCTACCAATGTTCCGAATGCGGCGGTACTTCCCCGAAATGGCAGGGTAAATGCCCGCA
TTGCGGCGAGTGGAACACGCTTCAGGAAAGCCTGGCCGCGCCCGAACCGAAAAACGCCCGTTTCCAATCTTGGGCGGCGG
ACACTTCGACCGTCCAATCCCTCTCCGCCGTTACCGCGACCGAAGTGCCGCGTAATCCGACCGGCATGGGCGAGCTTGAC
CGCGTATTGGGCGGTGGTTTGGTCGATGGCGCGGTCATCCTGCTCGGCGGCGACCCCGGCATCGGCAAATCTACGTTGCT
GTTGCAAACCATCGCCAAAATGGCGCAAAGCCGTAAAGTGCTGTACGTTTCCGGTGAAGAATCCGCCCAACAAGTCGCCC
TGCGCGCACAACGTTTGGAACTGCCTACCGAAGGCGTGAACCTGCTTGCTGAAATCCGCATGGAAGCGATTCAGACGGCC
TTGAAACAGCATCAGCCCGAAGTCGTCGTTATCGACTCCATCCAAACCATGTATTCCGACCAAATCACTTCCGCCCCCGG
TTCCGTGTCGCAGGTGCGCGAATGTGCCGCCCAACTGACGCGTATGGCGAAACAGATGGGCATCGCCATGATACTGGTCG
GACACGTTACCAAAGACGGCGCGATTGCCGGCCCGCGCGTGCTGGAACACATGGTCGATACCGTGCTGTATTTCGAGGGC
GACCAACATTCCAACTACCGCATGATACGCGCCATTAAAAACCGCTTCGGTGCGGCAAACGAACTGGGCGTATTCGCCAT
GACCGAAAACGGTTTAAAAGGCGTATCCAATCCGTCCGCCATTTTCCTCGCCAGCTACCGCGACGATACGCCCGGCTCGT
GCGTTTTGGTTACACAAGAAGGCAGCCGCCCGCTTTTGATCGAAATTCAGGCATTGGTCGATGATGCACACGGTTTCACA
CCCAAACGACTCACCGTCGGTCTCGAACAAAACCGCCTCGCCATGCTGCTCGCCGTCCTCAACCGCCACGGCGGCATCGC
CTGTTTCGACCAAGACGTGTTCCTCAATGCCGTCGGCGGCGTCAAAATCGGCGAACCCGCCGCCGACCTCGCCGTCATCC
TCGCCATGCTCTCCAGCTTCCGCAACCGCCCCATGCCCGAAAAAACCGTGGTTTTCGGCGAAATCGGCCTCAGCGGCGAA
GTCCGCCCTGTTGCACGCGGACAAGAGCGGCTCAAAGAAGCGGAAAAACTCGGCTTCAAACGCGCCATCGTCCCCAAAGC
CAATATGCCGCGCAATGCCAAAGAGTTTCCGAACCTGAAAATCTACGGCGTCAGCAGTTTGCAGGAAGCGATTGATGTTT
GTCGTGACGGGGACTAA

Domains

Predicted by InterproScan.

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(9-36)

AAA domain (AAA_25)

(80-220)

Subunit ChlI of Mg-chelatase (ChlI)

(366-428)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA Bacillus subtilis subsp. subtilis str. 168

49.458

100

0.498
  radA Streptococcus mitis NCTC 12261

47.149

99.563

0.469
  radA Streptococcus pneumoniae Rx1

47.345

98.69

0.467
  radA Streptococcus pneumoniae D39

47.345

98.69

0.467
  radA Streptococcus pneumoniae R6

47.345

98.69

0.467
  radA Streptococcus pneumoniae TIGR4

47.345

98.69

0.467
  radA Streptococcus mitis SK321

47.228

98.472

0.465