Detailed information    

insolico Bioinformatically predicted

Overview

Name   tpc   Type   Machinery gene
Locus tag   LPB400_RS08490 Genome accession   NZ_CP079818
Coordinates   1769903..1771051 (-) Length   382 a.a.
NCBI ID   WP_219088728.1    Uniprot ID   -
Organism   Neisseria perflava strain LPB0400     
Function   DNA processing; DNA transport into the cytoplasm (predicted from homology)   
DNA processing DNA binding and uptake

Genomic Context

Location: 1764903..1776051
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LPB400_RS08460 (LPB400_08470) - 1765397..1765933 (-) 537 WP_070459909.1 NUDIX hydrolase -
  LPB400_RS08465 (LPB400_08475) folB 1766007..1766357 (-) 351 WP_070459906.1 dihydroneopterin aldolase -
  LPB400_RS08470 (LPB400_08480) plsY 1766415..1767026 (+) 612 WP_070459903.1 glycerol-3-phosphate 1-O-acyltransferase PlsY -
  LPB400_RS08475 (LPB400_08485) greB 1767114..1767605 (-) 492 WP_070459900.1 transcription elongation factor GreB -
  LPB400_RS08480 (LPB400_08490) purF 1767680..1769224 (-) 1545 WP_219088726.1 amidophosphoribosyltransferase -
  LPB400_RS08485 (LPB400_08495) - 1769377..1769910 (-) 534 WP_107791926.1 CvpA family protein -
  LPB400_RS08490 (LPB400_08500) tpc 1769903..1771051 (-) 1149 WP_219088728.1 SPOR domain-containing protein Machinery gene
  LPB400_RS08495 (LPB400_08505) folC 1771065..1772348 (-) 1284 WP_219088729.1 bifunctional tetrahydrofolate synthase/dihydrofolate synthase -
  LPB400_RS08500 (LPB400_08510) - 1772387..1772839 (-) 453 WP_219088731.1 protein YgfX -
  LPB400_RS08505 (LPB400_08515) - 1772844..1773203 (-) 360 WP_036490466.1 hypothetical protein -
  LPB400_RS08510 (LPB400_08520) - 1773267..1773995 (-) 729 WP_219088733.1 amino acid ABC transporter ATP-binding protein -
  LPB400_RS11075 - 1774076..1774225 (-) 150 WP_225905470.1 hypothetical protein -
  LPB400_RS08520 (LPB400_08530) rsmA 1774326..1775105 (-) 780 WP_107791931.1 16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))- dimethyltransferase RsmA -
  LPB400_RS08525 (LPB400_08535) - 1775194..1775793 (-) 600 WP_219088736.1 Maf family protein -

Sequence

Protein


Download         Length: 382 a.a.        Molecular weight: 41797.79 Da        Isoelectric Point: 9.9754

>NTDB_id=589655 LPB400_RS08490 WP_219088728.1 1769903..1771051(-) (tpc) [Neisseria perflava strain LPB0400]
MSDNKQKETPNGYDLDGYERLKRRNRRRLVLASGLVVASGMLFGLALTSGDDKNSPFKEAPVGQSQAKTADEPSKAVVLE
PNKEDVAAAEEAARHADAEAPNKPQNAGDEEDNAPVEVLKPNRESAPEDVGEPLVLINDTLDDGNIKGLEESERIQRAEA
AKREAAERRAEERRQRQAEQRAAAARKTQAQQETAEKENALAAKKRVLQARAEKAEREAAAERNKLAQLEKAEKAIAERK
SAKNSKDSVKDKAEPAKKAEAKVEKPKNEKAKPETAKAEKADKVKTAEKPSEKAKPKAEKETAEAKPAKKAAIQAGYAEK
ERAQSLQRKMKAAGIDSTITEVMTDKGKVYRVKSASYKNARDAERDLNKLRVHGIAGQVTSE

Nucleotide


Download         Length: 1149 bp        

>NTDB_id=589655 LPB400_RS08490 WP_219088728.1 1769903..1771051(-) (tpc) [Neisseria perflava strain LPB0400]
ATGTCCGACAATAAACAAAAAGAAACTCCAAACGGATACGATTTAGACGGTTACGAACGACTCAAACGTCGCAACCGCCG
TCGCTTGGTCTTGGCCTCCGGCTTGGTGGTGGCATCGGGTATGCTGTTCGGTCTGGCGCTGACTTCCGGCGACGATAAAA
ATTCACCGTTTAAAGAAGCGCCTGTCGGTCAGAGCCAAGCCAAAACGGCTGACGAGCCGAGCAAGGCGGTTGTTTTAGAG
CCTAATAAAGAGGATGTCGCTGCTGCTGAAGAGGCTGCCCGCCATGCGGATGCCGAAGCACCAAATAAACCGCAAAATGC
AGGCGACGAAGAAGACAATGCGCCGGTTGAAGTATTGAAGCCAAACCGCGAATCTGCTCCCGAAGATGTTGGCGAGCCGT
TGGTTTTGATCAACGATACTTTAGATGACGGCAATATCAAAGGCTTGGAAGAGTCCGAACGTATTCAACGTGCCGAGGCT
GCCAAACGTGAAGCTGCAGAGCGCCGAGCCGAAGAACGCCGCCAACGTCAGGCTGAACAACGTGCTGCTGCGGCCCGTAA
AACACAAGCCCAACAGGAAACAGCAGAGAAAGAAAACGCATTGGCAGCTAAAAAACGCGTACTTCAAGCGCGTGCTGAAA
AAGCAGAGCGTGAAGCCGCTGCAGAACGCAATAAATTGGCACAATTGGAAAAAGCAGAGAAAGCCATTGCCGAGCGTAAA
TCTGCCAAAAACAGCAAAGACAGCGTAAAAGACAAGGCCGAACCTGCTAAGAAAGCAGAAGCCAAAGTTGAAAAACCAAA
AAATGAAAAAGCTAAACCAGAAACGGCCAAAGCAGAAAAAGCCGATAAGGTAAAAACTGCCGAGAAGCCGTCTGAAAAAG
CCAAGCCTAAAGCTGAAAAAGAAACAGCAGAAGCCAAGCCTGCGAAAAAAGCTGCCATTCAGGCTGGTTATGCTGAAAAA
GAACGTGCGCAAAGCCTGCAACGTAAAATGAAAGCCGCAGGTATCGACTCGACCATTACTGAAGTGATGACCGATAAAGG
TAAGGTGTATCGCGTGAAATCAGCCAGTTATAAAAATGCACGCGATGCCGAGCGCGATTTGAACAAATTGCGTGTACATG
GCATTGCCGGTCAGGTGACCAGTGAGTAA

Domains

Predicted by InterproScan.

SPOR domain (SPOR)

(309-380)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  tpc Neisseria gonorrhoeae MS11

49.495

100

0.513