Detailed information    

insolico Bioinformatically predicted

Overview

Name   recB   Type   Machinery gene
Locus tag   LPB400_RS08395 Genome accession   NZ_CP079818
Coordinates   1749924..1753580 (+) Length   1218 a.a.
NCBI ID   WP_219088710.1    Uniprot ID   -
Organism   Neisseria perflava strain LPB0400     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1744924..1758580
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LPB400_RS08390 (LPB400_08400) - 1746021..1749779 (+) 3759 WP_219088708.1 hemagglutinin repeat-containing protein -
  LPB400_RS08395 (LPB400_08405) recB 1749924..1753580 (+) 3657 WP_219088710.1 exodeoxyribonuclease V subunit beta Machinery gene
  LPB400_RS08400 (LPB400_08410) - 1753640..1754371 (-) 732 WP_219088712.1 phosphoadenylyl-sulfate reductase -
  LPB400_RS08405 (LPB400_08415) dinB 1754487..1755545 (-) 1059 WP_219088714.1 DNA polymerase IV -
  LPB400_RS08410 (LPB400_08420) - 1755623..1756672 (-) 1050 WP_219089726.1 sulfate ABC transporter substrate-binding protein -
  LPB400_RS08415 (LPB400_08425) - 1757061..1757891 (+) 831 WP_219088717.1 DUF4198 domain-containing protein -

Sequence

Protein


Download         Length: 1218 a.a.        Molecular weight: 138167.45 Da        Isoelectric Point: 5.7121

>NTDB_id=589653 LPB400_RS08395 WP_219088710.1 1749924..1753580(+) (recB) [Neisseria perflava strain LPB0400]
MSSALPFDALTLSIDGTNLIEASAGTGKTYGIAALFTRLIVLEKKDIEKILVVTFTKAATAELKTRLRARLDEVLQVLNE
IQTLGGKPEHISDGLNKYYEKEKKSPDDFLNRLIPLALGEQDGQESCHRLILRLKAALSQFDNASIYTIHGFCQRVLRDY
AFLCGAPLDVELSDDSRERLLIPAQDFWRQKVATNATLAQLVFDRKCTPEEMLAEIKSYTGRPYLKFRRPEGNLKEAQAN
LQETWQKVCDQLEDLEKAFWAIFPKLNGQTYKRNTFENVFTDLKTNAESNRLPRLSKQTLGKLSLFSIDTLNSKLKKEYK
ADADTPEIIQLQVLANLGRDLQAMKSAEEAVFICLQLDLLSYINQSIAEQKKSRRERVFDDLLLDVHQALTTNEHGNALA
KAAAANWEIALIDEFQDTDPLQYEIFRQIFIEQGCPLFLVGDPKQAIYSFRGADIYAYLQAAQDADRHYTLAVNYRSHAK
LINGISALFKQKKHPFVLENIDYSEVSASRAESRLSPHCPAIQVRWINTDDQTGKEILRSRAAEYCADEIAFALNEAAEG
RLNFKGRALESGDIAVLVRTNNEAAMIAGKLKQRRIQSVLLSRQSVFDSAEADSLSALIGFWLNPRQTDWLRFVLTGVLF
GYTAKEIYELNHNEHQLLKWLESSAEAMEKWRKGGIFAAVQQFAVLHDIETRLLKGGNERSLTNYYQILELLAEEDSQSR
NPAALHKWLNEQISRARSGHFPSDAQTIRLESDEKLVKIVTMHASKGLQYPLVYCPFAWDTKDNSKENWKILHTENHETE
LLAKSQTSEAELSHLADEKTAEDLRLLYVALTRAEEQLNIYAAANKNCTPNNPFAYLLEGLPDAGRESVSQSYKSATDVV
EMLKTNWQRFIKNAPENTEFTFTEEAPLETVYQYSRQQDQAFSAHGIKRRDFDFIRHTSFTGLSRHTKSTDEQHEPLQPA
IDPAESADRAMPSENLPSSLSDGLDIHHFPRGTNAGVCLHEMLEKLDFAASAESQSEMIAEVLQRHSFEDKWLPTVSAML
DICRLTPLIGESLSQIPPTRRLPEMGFTLYMDDFKLDDLRRWFASSEANLPPECVQAAQLLDFHDLQGYLNGFIDMVCQD
SDGNVVLIDYKSNHLGNDASAYTQQAMNEAVAHHHYYLQALIYAVAIARYYALRGKPLPKIAIRYLFLRGMDGSERGIWK
WDINTALLSTFVERKTNS

Nucleotide


Download         Length: 3657 bp        

>NTDB_id=589653 LPB400_RS08395 WP_219088710.1 1749924..1753580(+) (recB) [Neisseria perflava strain LPB0400]
ATGTCTTCCGCCCTTCCTTTTGACGCGCTCACACTTTCCATCGACGGCACCAACCTCATCGAAGCTTCCGCCGGTACGGG
TAAAACCTACGGCATTGCCGCGCTCTTTACCCGACTGATTGTTTTAGAAAAAAAAGACATCGAGAAAATTCTGGTCGTTA
CCTTTACCAAAGCGGCGACGGCAGAACTGAAAACCCGTTTGCGCGCGCGTTTGGACGAAGTGTTGCAGGTTTTGAACGAA
ATTCAAACCTTGGGCGGCAAGCCGGAACATATTTCAGACGGCCTGAACAAATATTACGAAAAAGAGAAAAAATCTCCTGA
TGACTTTCTCAATCGTTTGATTCCTTTGGCTTTAGGTGAGCAAGACGGACAAGAAAGTTGCCATCGCCTGATTCTCCGCC
TCAAAGCCGCGCTGAGCCAGTTTGACAACGCATCGATTTACACCATCCACGGCTTCTGTCAGCGCGTCTTGCGCGATTAC
GCGTTTTTGTGCGGCGCACCTTTGGATGTCGAGCTGTCGGACGACTCGCGTGAGAGGCTGCTGATTCCTGCGCAAGACTT
TTGGCGGCAGAAAGTGGCAACCAATGCCACATTGGCACAATTGGTTTTTGACCGAAAATGCACGCCTGAAGAAATGCTTG
CCGAAATCAAAAGCTACACCGGACGCCCCTATCTGAAATTCAGACGGCCTGAAGGCAATTTGAAAGAAGCTCAAGCCAAC
CTTCAAGAAACATGGCAAAAAGTTTGCGATCAGTTGGAAGACTTGGAAAAAGCATTTTGGGCAATCTTTCCCAAACTTAA
CGGCCAGACCTACAAAAGAAATACCTTTGAAAATGTTTTTACCGATTTAAAAACAAACGCCGAATCCAACCGTCTGCCCC
GCCTGAGCAAACAAACGCTAGGAAAATTAAGCCTCTTCAGTATCGATACACTCAACAGCAAACTGAAAAAAGAATATAAA
GCCGATGCTGATACGCCGGAAATTATTCAGCTGCAAGTCTTAGCCAATCTGGGCCGTGATTTGCAGGCAATGAAAAGCGC
GGAAGAAGCAGTCTTCATCTGCCTGCAACTCGACCTACTTTCCTACATCAACCAATCCATTGCCGAACAAAAAAAATCAC
GCCGCGAGCGCGTGTTTGATGATTTGCTGCTGGATGTCCATCAGGCATTGACCACCAATGAACACGGCAACGCATTGGCA
AAAGCGGCGGCGGCAAACTGGGAAATCGCGCTGATTGACGAATTCCAAGATACCGACCCGTTGCAGTACGAAATTTTCCG
CCAAATCTTTATCGAACAAGGCTGCCCGCTGTTTCTCGTTGGCGACCCCAAGCAGGCGATTTACAGCTTTCGCGGTGCGG
ACATTTATGCCTATCTGCAAGCCGCGCAAGATGCGGACAGGCATTACACCCTCGCCGTCAACTACCGCAGCCATGCCAAG
CTGATCAACGGCATCAGCGCTTTGTTCAAACAAAAAAAACACCCCTTTGTATTGGAAAACATCGATTACAGCGAGGTCTC
CGCCAGCCGCGCCGAAAGCCGGCTGTCGCCACACTGCCCTGCTATCCAAGTGCGCTGGATCAATACGGACGACCAAACCG
GCAAAGAGATTTTGCGCAGCCGAGCCGCCGAATATTGCGCCGATGAAATTGCCTTTGCGCTCAATGAAGCGGCCGAAGGC
CGTCTGAATTTCAAAGGTCGCGCATTGGAATCCGGCGATATTGCCGTTTTGGTCCGTACCAACAACGAAGCGGCGATGAT
TGCCGGAAAACTGAAACAGCGCCGTATCCAAAGCGTGTTGCTGTCACGCCAGTCCGTTTTCGATTCTGCCGAGGCCGACT
CGCTGTCCGCGCTGATCGGCTTTTGGCTCAACCCAAGGCAAACCGACTGGCTGCGCTTTGTCTTGACCGGCGTTTTGTTC
GGCTATACCGCCAAAGAGATTTACGAACTCAACCACAACGAACATCAGCTGCTGAAATGGCTGGAGTCGTCTGCCGAGGC
CATGGAAAAATGGCGGAAAGGTGGCATTTTTGCCGCCGTGCAGCAGTTTGCCGTCCTACATGATATTGAAACACGCCTGC
TCAAAGGCGGCAACGAGCGCAGCCTGACCAATTACTACCAAATTTTGGAGCTGTTGGCCGAAGAAGACAGCCAAAGCCGC
AACCCTGCCGCCCTGCATAAATGGTTAAACGAGCAAATCAGCCGTGCGCGCAGCGGCCATTTCCCGTCAGACGCGCAAAC
CATCCGTCTTGAAAGCGACGAAAAACTGGTCAAAATCGTTACCATGCACGCGTCAAAAGGTTTGCAATATCCTTTGGTTT
ACTGCCCCTTCGCGTGGGATACCAAAGACAATTCCAAAGAAAACTGGAAAATCCTGCATACCGAAAACCACGAAACCGAG
CTGCTGGCCAAATCGCAAACCTCGGAAGCAGAACTCAGCCACCTTGCCGACGAAAAGACGGCAGAAGATTTACGCCTGCT
TTATGTCGCCCTTACCCGCGCCGAAGAACAGCTCAACATCTACGCCGCCGCCAACAAAAACTGTACGCCCAACAATCCTT
TTGCCTATCTGCTCGAAGGTTTGCCGGATGCCGGCCGCGAAAGCGTCAGCCAAAGCTATAAAAGCGCGACAGACGTTGTA
GAAATGCTTAAAACCAACTGGCAACGCTTTATCAAAAACGCGCCGGAAAATACAGAGTTTACATTCACGGAAGAAGCCCC
GCTGGAAACCGTCTATCAATACAGCCGACAGCAAGACCAAGCTTTTAGCGCACATGGCATCAAACGCCGCGATTTTGACT
TTATCCGCCACACCAGCTTTACCGGTTTGAGCAGGCACACCAAGTCAACCGACGAACAACACGAACCTTTGCAACCTGCC
ATCGACCCGGCAGAAAGCGCAGACCGTGCCATGCCGTCTGAAAACCTGCCGTCCTCGCTTTCAGACGGCCTCGATATCCA
TCATTTCCCCCGCGGCACCAATGCCGGCGTATGTTTGCATGAAATGTTGGAAAAACTCGACTTCGCCGCCTCTGCCGAGA
GCCAATCCGAAATGATTGCCGAAGTTTTACAACGCCACAGCTTTGAAGACAAATGGCTGCCGACGGTAAGCGCCATGCTC
GACATCTGCCGCCTGACGCCTTTAATCGGTGAGAGCCTGTCGCAGATTCCACCGACCCGACGCCTGCCCGAAATGGGGTT
CACCCTGTACATGGACGATTTCAAACTGGACGACTTGCGCCGTTGGTTTGCCTCAAGCGAAGCAAACCTGCCACCCGAAT
GCGTCCAAGCCGCGCAACTGCTTGATTTCCATGATTTGCAAGGCTATTTGAACGGCTTCATCGATATGGTTTGCCAAGAT
TCAGACGGCAATGTCGTTTTAATCGACTACAAATCCAACCATTTGGGCAACGATGCAAGCGCCTACACGCAACAGGCGAT
GAACGAAGCCGTGGCGCATCATCACTACTACCTGCAAGCCCTGATCTACGCCGTTGCCATTGCGCGCTACTATGCCCTGC
GTGGCAAGCCGTTGCCCAAAATCGCCATCCGCTACCTCTTCCTGCGCGGTATGGACGGCTCGGAACGAGGCATTTGGAAA
TGGGACATCAATACCGCCCTACTTTCCACTTTTGTTGAACGAAAAACAAATTCTTGA

Domains

Predicted by InterproScan.

UvrD/REP helicase N-terminal domain (UvrD-helicase)

(13-465)

UvrD-like helicase C-terminal domain (UvrD_C)

(469-842)

PD-(D/E)XK nuclease superfamily (PDDEXK_1)

(996-1189)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recB Neisseria gonorrhoeae strain FA1090

60.563

99.097

0.6