Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilJ   Type   Machinery gene
Locus tag   LPB400_RS07935 Genome accession   NZ_CP079818
Coordinates   1660615..1661550 (+) Length   311 a.a.
NCBI ID   WP_070460863.1    Uniprot ID   -
Organism   Neisseria perflava strain LPB0400     
Function   type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1655615..1666550
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LPB400_RS07915 (LPB400_07925) - 1656966..1657547 (-) 582 WP_003683473.1 Fe-Mn family superoxide dismutase -
  LPB400_RS07920 (LPB400_07930) dnaB 1657702..1659108 (+) 1407 WP_036493702.1 replicative DNA helicase -
  LPB400_RS07925 (LPB400_07935) pilH 1659266..1659934 (+) 669 WP_219088641.1 Tfp pilus assembly protein FimT/FimU Machinery gene
  LPB400_RS07930 (LPB400_07940) pilV 1659947..1660612 (+) 666 WP_219088643.1 type IV pilus modification protein PilV -
  LPB400_RS07935 (LPB400_07945) pilJ 1660615..1661550 (+) 936 WP_070460863.1 pilus assembly protein PilW Machinery gene
  LPB400_RS07940 (LPB400_07950) pilK 1661529..1662074 (+) 546 WP_070460864.1 pilus assembly protein Machinery gene
  LPB400_RS07945 (LPB400_07955) pilL 1662079..1662567 (+) 489 WP_070460866.1 PilX family type IV pilin Machinery gene
  LPB400_RS07950 (LPB400_07960) - 1662620..1663240 (-) 621 WP_070460868.1 Smr/MutS family protein -
  LPB400_RS07955 (LPB400_07965) - 1663377..1663754 (+) 378 WP_070460870.1 hypothetical protein -
  LPB400_RS07960 (LPB400_07970) trpE 1663890..1665365 (+) 1476 WP_070589778.1 anthranilate synthase component I -
  LPB400_RS07965 (LPB400_07975) - 1665409..1665978 (+) 570 WP_107769433.1 RNA 2'-phosphotransferase -

Sequence

Protein


Download         Length: 311 a.a.        Molecular weight: 33549.19 Da        Isoelectric Point: 8.1015

>NTDB_id=589650 LPB400_RS07935 WP_070460863.1 1660615..1661550(+) (pilJ) [Neisseria perflava strain LPB0400]
MNNKRLLNHIPNKTAMRGFSILEFLVASLLSMIVLMAVSSTYFTARGLNKSANSRIGIQQDLRNTANMIVRDARMAGNFG
CFNMSNSPASAVIEDKSSDEYTLKTASVNKLLPVKEINKLGYAGFAQTGKALLFQYGIDKANPAAKTAIVSSCSGIAKPQ
TEIKDLAAAKLALKINDSDQDGSIAIMKHEMIAYAVGKLGEESGLFRFQLSNDGSWSNPQLLIKGITTMDIHYIYAECPN
SENASASGVNTESFDYKNALDISAEAKSPASIQIVLNNGSIDPSKEQDNKVDIYNINATIRGGNVCADRSL

Nucleotide


Download         Length: 936 bp        

>NTDB_id=589650 LPB400_RS07935 WP_070460863.1 1660615..1661550(+) (pilJ) [Neisseria perflava strain LPB0400]
ATGAACAATAAACGCTTACTCAACCATATTCCCAATAAAACCGCGATGCGCGGTTTCAGCATCCTTGAATTTCTGGTTGC
CAGTCTGCTCAGTATGATCGTCTTAATGGCTGTCAGCTCCACCTACTTCACTGCACGCGGATTAAACAAATCTGCCAACT
CCCGCATCGGTATCCAGCAAGATTTGCGCAACACCGCCAATATGATCGTCCGCGATGCGCGTATGGCAGGCAATTTCGGT
TGCTTCAATATGTCGAATTCTCCCGCCTCTGCAGTAATAGAAGACAAAAGCTCGGATGAATACACATTGAAAACAGCTAG
TGTGAATAAGCTGTTACCGGTTAAAGAAATCAATAAATTAGGCTATGCAGGTTTTGCTCAAACCGGCAAAGCCCTGCTGT
TTCAATATGGAATCGACAAAGCAAACCCTGCTGCAAAAACTGCTATTGTTAGTAGCTGCTCAGGCATTGCAAAGCCTCAA
ACAGAAATTAAAGATTTGGCGGCGGCAAAATTGGCTTTAAAAATTAACGACTCTGATCAAGACGGCAGTATCGCCATCAT
GAAACATGAAATGATTGCCTACGCTGTCGGCAAACTTGGCGAAGAGAGCGGTTTGTTCCGTTTCCAATTATCAAATGATG
GCTCATGGAGTAATCCGCAGCTGTTGATTAAAGGCATTACAACCATGGATATCCACTATATCTATGCAGAATGTCCTAAT
TCTGAAAATGCATCTGCCAGCGGAGTAAATACAGAATCATTTGATTACAAAAACGCATTGGATATCTCAGCTGAGGCTAA
GTCTCCGGCTTCTATCCAAATCGTACTGAATAACGGCAGTATTGACCCATCAAAAGAACAAGACAATAAAGTCGATATCT
ATAATATTAATGCCACTATCCGCGGAGGAAACGTATGCGCCGACCGATCACTCTAA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilJ Neisseria gonorrhoeae MS11

48.276

100

0.495