Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilH   Type   Machinery gene
Locus tag   LPB400_RS07925 Genome accession   NZ_CP079818
Coordinates   1659266..1659934 (+) Length   222 a.a.
NCBI ID   WP_219088641.1    Uniprot ID   -
Organism   Neisseria perflava strain LPB0400     
Function   type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1654266..1664934
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LPB400_RS07905 (LPB400_07915) - 1654293..1655138 (+) 846 WP_070460851.1 DUF817 domain-containing protein -
  LPB400_RS07910 (LPB400_07920) - 1655199..1656740 (-) 1542 WP_003747033.1 OFA family MFS transporter -
  LPB400_RS07915 (LPB400_07925) - 1656966..1657547 (-) 582 WP_003683473.1 Fe-Mn family superoxide dismutase -
  LPB400_RS07920 (LPB400_07930) dnaB 1657702..1659108 (+) 1407 WP_036493702.1 replicative DNA helicase -
  LPB400_RS07925 (LPB400_07935) pilH 1659266..1659934 (+) 669 WP_219088641.1 Tfp pilus assembly protein FimT/FimU Machinery gene
  LPB400_RS07930 (LPB400_07940) pilV 1659947..1660612 (+) 666 WP_219088643.1 type IV pilus modification protein PilV -
  LPB400_RS07935 (LPB400_07945) pilJ 1660615..1661550 (+) 936 WP_070460863.1 pilus assembly protein PilW Machinery gene
  LPB400_RS07940 (LPB400_07950) pilK 1661529..1662074 (+) 546 WP_070460864.1 pilus assembly protein Machinery gene
  LPB400_RS07945 (LPB400_07955) pilL 1662079..1662567 (+) 489 WP_070460866.1 PilX family type IV pilin Machinery gene
  LPB400_RS07950 (LPB400_07960) - 1662620..1663240 (-) 621 WP_070460868.1 Smr/MutS family protein -
  LPB400_RS07955 (LPB400_07965) - 1663377..1663754 (+) 378 WP_070460870.1 hypothetical protein -

Sequence

Protein


Download         Length: 222 a.a.        Molecular weight: 24467.70 Da        Isoelectric Point: 8.4439

>NTDB_id=589649 LPB400_RS07925 WP_219088641.1 1659266..1659934(+) (pilH) [Neisseria perflava strain LPB0400]
MYQTQKGFTLIELLIVITIAAVMAVIALPNMNQWIASRRAASQAEQIANLLRFARNEAVRLNLPVYICPVKIKSDGSPNN
GCDSKYAGNGMLAYADKNGDSNYKNDTVDLSVRSIILNGGTDKVEYSFDYIPIGNDRSALSTSASNEVWWRFLPNGTFGH
STDGKNYQFSDGHIKISLTDKSATDAETKKARATVLLINGNGHVEICAKNDERKMCEYTSKK

Nucleotide


Download         Length: 669 bp        

>NTDB_id=589649 LPB400_RS07925 WP_219088641.1 1659266..1659934(+) (pilH) [Neisseria perflava strain LPB0400]
ATGTATCAGACACAAAAAGGCTTCACCCTAATTGAGTTGCTGATTGTCATTACTATTGCAGCAGTAATGGCCGTCATCGC
ACTTCCCAATATGAATCAATGGATTGCCTCCAGACGTGCAGCATCGCAAGCAGAGCAAATTGCCAATCTGCTGCGCTTCG
CGCGAAATGAGGCCGTCCGTCTCAATCTTCCCGTTTACATCTGCCCGGTCAAAATCAAATCCGATGGCTCGCCCAATAAT
GGTTGCGATTCCAAATATGCCGGTAATGGTATGTTGGCCTACGCCGATAAAAACGGAGATTCCAACTATAAAAACGATAC
AGTCGATTTATCCGTCCGCTCCATTATTCTCAATGGAGGCACCGACAAAGTAGAATACAGCTTCGACTACATCCCTATCG
GCAATGACCGTTCTGCCCTCTCTACTTCGGCTTCAAACGAAGTCTGGTGGAGGTTTCTTCCCAATGGTACATTTGGCCAT
TCGACCGATGGCAAGAATTATCAATTTTCAGACGGCCACATCAAAATCAGCCTGACGGATAAATCCGCTACCGATGCTGA
AACCAAGAAAGCCCGTGCTACCGTACTTTTAATCAATGGCAATGGGCATGTCGAAATCTGTGCTAAAAACGATGAGCGCA
AAATGTGCGAATACACTTCCAAAAAATAA

Domains

Predicted by InterproScan.

Prokaryotic N-terminal methylation motif (N_methyl)

(5-28)

Type II transport protein GspH (GspH)

(43-201)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilH Neisseria gonorrhoeae MS11

54.054

100

0.541