Detailed information    

insolico Bioinformatically predicted

Overview

Name   recG   Type   Machinery gene
Locus tag   LPB400_RS04605 Genome accession   NZ_CP079818
Coordinates   963562..965601 (+) Length   679 a.a.
NCBI ID   WP_219089699.1    Uniprot ID   -
Organism   Neisseria perflava strain LPB0400     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 958562..970601
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LPB400_RS04590 (LPB400_04595) grxC 959292..959549 (+) 258 WP_107792405.1 glutaredoxin 3 -
  LPB400_RS04595 (LPB400_04600) secB 959571..960005 (+) 435 WP_070461399.1 protein-export chaperone SecB -
  LPB400_RS04600 (LPB400_04605) - 960268..963312 (+) 3045 WP_219089697.1 TonB-dependent receptor -
  LPB400_RS04605 (LPB400_04610) recG 963562..965601 (+) 2040 WP_219089699.1 ATP-dependent DNA helicase RecG Machinery gene
  LPB400_RS04610 (LPB400_04615) gdhA 965666..967000 (-) 1335 WP_107867725.1 NADP-specific glutamate dehydrogenase -
  LPB400_RS04615 (LPB400_04620) - 967415..968209 (+) 795 WP_107810843.1 thymidylate synthase -
  LPB400_RS04620 (LPB400_04625) - 968269..969708 (-) 1440 WP_107792408.1 transferrin-binding protein-like solute binding protein -

Sequence

Protein


Download         Length: 679 a.a.        Molecular weight: 75017.82 Da        Isoelectric Point: 6.8393

>NTDB_id=589641 LPB400_RS04605 WP_219089699.1 963562..965601(+) (recG) [Neisseria perflava strain LPB0400]
MTPETQKQLKITDVSAKKLEKLNLHTAWDLVLHLPLRYEDETHIMPIKDAPIGVPCQVEGEVIHQEVTFKPRKQLIVQIA
DGSGSVLFLRFIHFYASNQKQMAVGKRIRAVGEIKHGFHGDEMIHPKIRDAESSGLAESLTPIYPTVNGLNQPTLRRIIQ
TALDVTPLHDTLPDALLGRLKLPHLAESLRLLHSPPPSFTIHQLSDGTLPAWQRLKFDELLAQQLSMRLARQKRVSGSAT
ALGGDGTLTQALRHALPFALTDAQERVVSEICHDMAQTHPMHRLLQGDVGSGKTIVAALSALTAIESGAQVAVMAPTEIL
AEQHFIKFKQWLEPLGLEVVWLSGSQRKKAKDEAKAKLADGSVKIAVGTHALFSDDVEFQNLGLVIVDEQHRFGVAQRLA
LKNKGRDVHQLMMSATPIPRTLAMSFFADLDVSVIDELPPGRTPIKTRLVNNVRRVEVEGFVLNICRKGQQAYWVCPLIE
ESETLQLQTATETLEQLQAALPELSIGLVHGRMKAAEKAEVMAEFAAGRLNVLVATTVIEVGVDVPNAALMVIEHAERMG
LAQLHQLRGRVGRGVAESVCVLLFAEPLSELAKARLKVIYEHTDGFEIARQDLNIRGPGEFLGARQSGVPMLRFANLEED
LHLLEQAREIAPLLIEQNPEIVEAHLARWLSSREGYLGV

Nucleotide


Download         Length: 2040 bp        

>NTDB_id=589641 LPB400_RS04605 WP_219089699.1 963562..965601(+) (recG) [Neisseria perflava strain LPB0400]
ATGACGCCCGAAACCCAAAAACAGCTCAAAATTACCGATGTTTCCGCTAAGAAGCTCGAGAAACTCAACCTCCATACCGC
ATGGGATTTGGTGTTGCACCTGCCGTTGCGTTATGAGGATGAGACGCACATCATGCCGATTAAGGATGCACCAATCGGCG
TGCCGTGTCAGGTTGAGGGCGAAGTCATTCATCAGGAAGTGACATTTAAGCCGCGCAAGCAGCTGATTGTCCAAATCGCC
GACGGTTCCGGCAGCGTCCTTTTTCTGCGCTTTATCCACTTTTATGCCAGCAACCAGAAACAGATGGCGGTCGGCAAGCG
CATCCGCGCCGTGGGCGAAATCAAGCACGGGTTTCACGGCGACGAGATGATTCATCCTAAAATCCGCGATGCCGAGAGCA
GCGGTTTGGCAGAAAGCCTTACGCCGATTTATCCGACCGTAAACGGTTTAAATCAACCCACTTTGCGCCGTATTATTCAG
ACGGCCTTGGACGTTACGCCGTTGCACGACACCTTGCCTGATGCTTTATTAGGCCGTCTGAAATTGCCGCACCTTGCCGA
AAGCCTGCGCCTTTTGCATTCGCCGCCGCCAAGCTTCACCATTCATCAACTTTCAGACGGCACGCTGCCTGCATGGCAAC
GGCTCAAATTTGACGAACTTTTGGCGCAACAGCTTTCTATGCGCTTGGCACGGCAGAAGCGCGTCAGCGGCTCGGCCACG
GCATTGGGTGGCGACGGCACATTGACTCAAGCCCTGCGCCACGCTTTGCCGTTTGCCCTGACTGATGCGCAAGAAAGAGT
TGTTTCCGAAATCTGCCACGATATGGCGCAAACCCACCCCATGCACCGCCTGCTGCAAGGCGATGTTGGCAGCGGCAAAA
CCATTGTGGCCGCCTTGTCTGCTTTGACTGCTATCGAATCCGGTGCGCAGGTGGCTGTAATGGCGCCGACCGAAATCCTT
GCCGAACAGCACTTCATCAAGTTCAAACAATGGCTTGAGCCGTTAGGGCTTGAAGTCGTTTGGCTTTCAGGCAGCCAGCG
CAAAAAAGCCAAAGACGAAGCCAAAGCCAAACTGGCTGACGGCTCTGTCAAAATTGCCGTCGGCACGCACGCCCTGTTTT
CTGACGACGTCGAGTTTCAAAATCTCGGCTTGGTGATTGTGGACGAACAACACCGTTTCGGTGTTGCTCAACGCCTTGCC
CTTAAAAACAAAGGGCGCGACGTCCACCAACTGATGATGTCCGCCACGCCCATTCCGCGCACGCTTGCCATGAGTTTTTT
CGCAGACTTAGACGTGTCTGTCATCGACGAATTGCCGCCCGGACGTACGCCGATTAAGACTCGCCTCGTCAACAACGTCC
GCCGCGTCGAAGTTGAAGGCTTTGTCCTTAATATTTGTCGCAAAGGGCAGCAGGCATACTGGGTCTGCCCGCTGATTGAA
GAAAGTGAAACCCTGCAACTGCAAACCGCCACCGAAACCCTCGAGCAGCTTCAGGCAGCCTTACCCGAACTCAGCATCGG
CTTGGTACACGGGCGCATGAAAGCCGCCGAAAAAGCCGAAGTCATGGCGGAATTTGCCGCAGGTCGTCTGAACGTCTTGG
TTGCCACCACCGTCATCGAAGTCGGCGTAGATGTGCCCAACGCTGCCCTGATGGTGATCGAACACGCCGAGCGCATGGGC
TTGGCGCAGCTTCACCAATTACGCGGACGGGTAGGGCGTGGCGTGGCAGAAAGCGTGTGTGTCCTCCTGTTTGCCGAACC
TTTGAGCGAACTCGCCAAAGCACGGTTGAAAGTCATCTACGAACACACCGACGGCTTTGAAATCGCCCGCCAAGACCTCA
ACATCCGCGGCCCCGGCGAATTTCTTGGCGCGCGCCAAAGCGGCGTCCCCATGCTACGCTTCGCCAACCTTGAAGAAGAC
TTACACCTTTTAGAACAAGCGCGCGAAATCGCCCCTTTGCTGATTGAGCAAAACCCTGAAATCGTCGAAGCACATCTAGC
AAGATGGCTTTCCAGTAGGGAAGGCTATTTGGGCGTATAA

Domains

Predicted by InterproScan.

ATP-dependent DNA helicase RecG, domain 3, C-terminal (RecG_dom3_C)

(603-665)

Helicase conserved C-terminal domain (Helicase_C)

(467-574)

RecG wedge domain (RecG_wedge)

(14-163)

DEAD/DEAH box helicase (DEAD)

(261-418)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recG Neisseria meningitidis strain C311

93.225

100

0.932