Detailed information    

insolico Bioinformatically predicted

Overview

Name   recX   Type   Regulator
Locus tag   LPB400_RS04555 Genome accession   NZ_CP079818
Coordinates   952143..952604 (-) Length   153 a.a.
NCBI ID   WP_219089564.1    Uniprot ID   -
Organism   Neisseria perflava strain LPB0400     
Function   inhibition of RecA (predicted from homology)   
Competence regulation

Genomic Context

Location: 947143..957604
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LPB400_RS04525 (LPB400_04530) - 947183..947872 (+) 690 WP_225905505.1 toxin-antitoxin system YwqK family antitoxin -
  LPB400_RS04530 (LPB400_04535) - 947919..948479 (-) 561 WP_219089560.1 adenine phosphoribosyltransferase -
  LPB400_RS04535 (LPB400_04540) gmk 948648..949265 (+) 618 WP_070607926.1 guanylate kinase -
  LPB400_RS04540 (LPB400_04545) rpoZ 949318..949524 (+) 207 WP_003682294.1 DNA-directed RNA polymerase subunit omega -
  LPB400_RS04545 (LPB400_04550) - 949629..951785 (+) 2157 WP_219089562.1 bifunctional (p)ppGpp synthetase/guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase -
  LPB400_RS04550 (LPB400_04555) - 951906..952067 (-) 162 WP_039861975.1 hypothetical protein -
  LPB400_RS04555 (LPB400_04560) recX 952143..952604 (-) 462 WP_219089564.1 recombination regulator RecX Regulator
  LPB400_RS04560 (LPB400_04565) - 952705..953418 (-) 714 WP_070461395.1 phosphoglycolate phosphatase -
  LPB400_RS04565 (LPB400_04570) - 953840..955105 (+) 1266 WP_039861976.1 Glu/Leu/Phe/Val dehydrogenase -
  LPB400_RS04570 (LPB400_04575) - 955266..956081 (+) 816 WP_219089566.1 FKBP-type peptidyl-prolyl cis-trans isomerase -
  LPB400_RS04575 (LPB400_04580) purN 956178..956804 (+) 627 WP_107792403.1 phosphoribosylglycinamide formyltransferase -
  LPB400_RS04580 (LPB400_04585) - 956835..957503 (+) 669 WP_107792404.1 DUF3108 domain-containing protein -

Sequence

Protein


Download         Length: 153 a.a.        Molecular weight: 17846.08 Da        Isoelectric Point: 8.8080

>NTDB_id=589640 LPB400_RS04555 WP_219089564.1 952143..952604(-) (recX) [Neisseria perflava strain LPB0400]
MKPPKTLRARALDILSRQEVSRVGLKRKLAPHAESEEELEKVLDEFAERNWQSDQRYAEAYIHSKSNRYGTLRLKQALAQ
QGIDADDCREFLPGREDELQTAISVLRKKFKQEAQDLKEKQKQARFLAYRGFGADTIQTALKTAWNEDENFYQ

Nucleotide


Download         Length: 462 bp        

>NTDB_id=589640 LPB400_RS04555 WP_219089564.1 952143..952604(-) (recX) [Neisseria perflava strain LPB0400]
ATGAAACCTCCCAAAACCTTACGCGCCCGCGCCTTGGATATTCTTTCCCGTCAGGAAGTCAGCCGTGTCGGCTTGAAACG
CAAACTGGCTCCCCACGCTGAAAGCGAAGAAGAGTTGGAAAAGGTTTTGGACGAATTCGCCGAACGAAATTGGCAATCCG
ACCAACGTTACGCAGAAGCCTATATTCACAGCAAGAGCAACCGTTACGGCACGCTCCGCCTCAAGCAAGCCTTGGCGCAA
CAAGGTATCGATGCAGATGACTGTCGGGAGTTCCTACCCGGCAGGGAGGACGAGCTGCAAACCGCCATTTCCGTCTTGCG
TAAAAAATTCAAGCAGGAAGCTCAAGATTTGAAAGAAAAACAAAAACAAGCGCGTTTCCTTGCCTATCGCGGCTTTGGTG
CCGACACCATTCAGACGGCCTTAAAAACCGCGTGGAATGAAGACGAAAACTTCTATCAATAA

Domains

Predicted by InterproScan.

RecX family (RecX_HTH2)

(30-143)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recX Neisseria gonorrhoeae strain FA1090

77.703

96.732

0.752