Detailed information    

insolico Bioinformatically predicted

Overview

Name   recC   Type   Machinery gene
Locus tag   LPB400_RS03825 Genome accession   NZ_CP079818
Coordinates   789477..792776 (+) Length   1099 a.a.
NCBI ID   WP_219089461.1    Uniprot ID   -
Organism   Neisseria perflava strain LPB0400     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 784477..797776
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LPB400_RS03800 (LPB400_03805) comM 784769..786265 (-) 1497 WP_107768914.1 YifB family Mg chelatase-like AAA ATPase Machinery gene
  LPB400_RS03805 (LPB400_03810) - 786279..786599 (-) 321 WP_003684455.1 accessory factor UbiK family protein -
  LPB400_RS03810 (LPB400_03815) metK 786709..787878 (-) 1170 WP_107768913.1 methionine adenosyltransferase -
  LPB400_RS03815 (LPB400_03820) - 788271..789152 (+) 882 WP_219089459.1 lysophospholipid acyltransferase family protein -
  LPB400_RS03825 (LPB400_03830) recC 789477..792776 (+) 3300 WP_219089461.1 exodeoxyribonuclease V subunit gamma Machinery gene
  LPB400_RS03830 (LPB400_03835) - 792780..793286 (+) 507 WP_219089463.1 thioredoxin family protein -
  LPB400_RS03835 (LPB400_03840) lapB 793401..794570 (-) 1170 WP_107810861.1 lipopolysaccharide assembly protein LapB -
  LPB400_RS03840 (LPB400_03845) - 794596..794919 (-) 324 WP_070873824.1 lipopolysaccharide assembly protein LapA domain-containing protein -
  LPB400_RS03845 (LPB400_03850) ilvE 795133..796131 (+) 999 WP_219089465.1 branched-chain-amino-acid transaminase -

Sequence

Protein


Download         Length: 1099 a.a.        Molecular weight: 124923.53 Da        Isoelectric Point: 4.6387

>NTDB_id=589638 LPB400_RS03825 WP_219089461.1 789477..792776(+) (recC) [Neisseria perflava strain LPB0400]
MFYLYQSDRLEALAEMCAHIHQTLSLDSVLAQEEVVVQSQGMRRYLNVFFARKLGVAANLKFSLPAGLAWQLMRKLVPDV
PPLSPFSPEVMRWRLLDLFRSEAFQTAPEYENVRLKLESYLHSSASADYQLAGQMADIFDQYLVYRPDWIDAWQAGKLLG
LGDDEDWQARLWRYLDDGSQSAPHRVALWEKLLAQLDKSVLPQRLFVFGISTMAPMYLQLLHQISKHCDVFVFALNPSSQ
YWGEVIDEAQILKRGDEADLSQAGHPLLASLGKQGRDFFDFLSEVETEQDIQVYEEGKDDTLLHCLQNDIQNLIMPSERL
YQQEEGKAGGQQALVQVHDADGNPVCVEPDKLLNDGSVKIVAAHSPLRELQVLKEELSLVLQKNPDWQPHDIAVLTPNIE
PYSPFIEAVFGQEQAGSQALPYSISDVKLSRRQPLLYALAQTLDLLESRFEVDKVLPLLESRLVLQRFGLSEEDVPLLHE
TVAGLNVHWGLDQTMREGKDNLFTWQQAVERLALGWMLPEGGNGMWQGVSAWHSNVNQLDVFSGFAEFIRTLADMAAQWQ
EPANVESWVQRCRDLLEKLFAPDTDDQYAKQQFEQSLAKWQEEAQLAEFDGLLPCKTVIRHIRRFLDSESQAGFLSGGIT
FCSMVPMRSLPFKMVCLLGLNDGDFPRNTKAAVFDLIAKHPKKGDRARRDDDRYLFLEALISAREMLYLSYIGHDIRNDA
EFAPSSLISELLDTIAAMTGKSGRELSEKWVKHHPLQAFSRRYFQKDALSDGLFSTRQDYADALNQPPAEAQPFFIEALS
QEEPGKTIQQGELISFWRNPVKVWLKKNLSWEQPYLDGAWESAEPFEPQHEGRIADAYLDARRKGEDFEDTAIQLNAESL
MPVGELGGLWQKQYQISAKNVDAELIRSNKRPSEPYEESFDDLVLQGTIGNLYECGRIVFLNQKDNAPNRIARLLEHLIF
CAVAPKSVANRQTYIVSLGETETYAAIEQQTAKELLKEWLVYFRIGQNTPLPFFAKTSLAAAEEYNKKEDWDTALRKAHE
VFNGNKMSKGQKEYTEVKLVFGHSDESPLDEPLFENLIVNLLVPLLTGVAGKTDTTEQE

Nucleotide


Download         Length: 3300 bp        

>NTDB_id=589638 LPB400_RS03825 WP_219089461.1 789477..792776(+) (recC) [Neisseria perflava strain LPB0400]
ATGTTTTATCTTTATCAGTCCGACCGTTTGGAAGCGCTTGCCGAAATGTGCGCGCATATTCATCAGACCTTGTCCTTGGA
TTCTGTATTGGCGCAGGAAGAAGTGGTGGTGCAGAGCCAGGGGATGCGGCGATATCTGAATGTGTTTTTTGCGCGCAAAC
TCGGCGTGGCGGCGAATTTGAAGTTCAGCCTGCCGGCCGGTTTGGCGTGGCAGCTGATGCGTAAATTGGTTCCCGATGTG
CCGCCGCTCAGTCCGTTTTCGCCTGAAGTCATGCGTTGGCGTTTGCTGGATTTGTTCCGCAGTGAAGCGTTTCAGACGGC
CCCGGAATACGAAAACGTGCGCCTGAAGCTGGAAAGTTATTTGCACAGCTCGGCATCGGCGGATTATCAGCTTGCCGGAC
AAATGGCGGATATTTTCGACCAATATTTGGTGTACCGCCCAGATTGGATTGATGCGTGGCAGGCTGGGAAGCTGCTGGGT
TTGGGCGATGATGAGGATTGGCAGGCACGGCTGTGGCGTTATTTGGACGATGGCAGCCAATCTGCGCCGCACCGCGTGGC
CTTGTGGGAAAAGCTCTTGGCGCAGTTGGATAAATCGGTCTTGCCGCAAAGGTTGTTTGTATTCGGCATTTCGACAATGG
CGCCGATGTATCTGCAATTGCTGCACCAAATTTCCAAGCATTGCGATGTATTTGTGTTTGCGCTCAATCCGAGCAGCCAA
TATTGGGGCGAGGTCATCGACGAGGCGCAGATTTTGAAAAGGGGCGATGAGGCGGATTTGTCGCAGGCAGGGCATCCGCT
GTTGGCTTCTTTGGGCAAGCAGGGGCGCGATTTCTTTGATTTTCTGTCGGAAGTGGAAACCGAGCAGGATATTCAGGTTT
ATGAAGAGGGAAAAGACGATACCTTATTGCATTGCCTGCAAAACGATATCCAAAACTTAATCATGCCGTCTGAACGCTTA
TATCAACAGGAAGAAGGCAAAGCAGGCGGGCAACAGGCTTTGGTTCAGGTTCACGATGCGGACGGCAATCCAGTGTGTGT
CGAGCCGGACAAGCTGTTGAATGACGGCTCGGTCAAAATTGTTGCGGCACACAGCCCTTTGCGCGAACTGCAGGTTTTGA
AAGAAGAGCTGTCGCTGGTGTTGCAAAAAAATCCCGACTGGCAGCCGCACGATATTGCCGTTTTGACGCCGAACATCGAG
CCGTACAGCCCGTTTATCGAAGCCGTTTTTGGACAGGAGCAGGCAGGCAGCCAGGCTTTACCATATTCGATTTCGGATGT
GAAACTCAGCCGCCGCCAGCCGTTGCTGTATGCTTTGGCGCAAACTTTGGACTTGCTGGAAAGCCGATTTGAAGTGGACA
AGGTTTTGCCTTTGCTGGAAAGCCGGTTGGTGCTGCAACGCTTCGGTTTGAGCGAGGAAGATGTGCCGCTGCTGCATGAG
ACTGTTGCCGGATTGAATGTGCATTGGGGTTTGGACCAAACCATGCGCGAGGGCAAAGACAACCTCTTTACTTGGCAGCA
GGCGGTAGAGCGTTTGGCCTTGGGCTGGATGCTGCCCGAAGGTGGCAACGGCATGTGGCAGGGAGTGAGCGCGTGGCATA
GCAATGTCAACCAGTTGGACGTGTTCAGCGGTTTTGCCGAATTTATCCGTACTTTGGCCGATATGGCGGCGCAATGGCAA
GAGCCTGCCAATGTGGAAAGCTGGGTGCAGCGTTGCCGCGATTTGCTGGAGAAACTGTTTGCTCCGGATACGGACGACCA
ATACGCCAAGCAGCAGTTTGAGCAGTCTTTGGCGAAATGGCAGGAAGAGGCGCAGTTGGCTGAATTTGACGGATTATTGC
CGTGTAAAACCGTTATCCGCCATATCCGCCGCTTTTTGGACAGTGAAAGCCAAGCCGGATTTTTGAGCGGCGGCATCACT
TTTTGCAGTATGGTGCCAATGCGCAGCCTGCCGTTTAAAATGGTTTGCCTGTTGGGTTTGAATGACGGCGATTTTCCGCG
CAATACCAAAGCGGCGGTGTTCGACCTGATTGCCAAACATCCGAAAAAAGGCGATCGCGCCCGCCGCGACGATGACCGTT
ATCTCTTCCTCGAAGCCTTAATCAGCGCGCGAGAAATGCTGTATTTGTCTTACATCGGCCACGATATACGCAATGATGCC
GAGTTTGCGCCGTCTTCGTTAATCAGCGAGCTGCTGGATACCATTGCCGCCATGACAGGGAAAAGCGGGCGCGAGTTGTC
GGAGAAATGGGTGAAACATCATCCGTTGCAGGCGTTTTCACGCCGTTATTTCCAAAAGGACGCGCTTTCAGACGGCCTCT
TCAGTACGCGCCAAGATTACGCCGATGCGTTGAACCAACCGCCAGCGGAAGCGCAGCCGTTTTTCATTGAGGCTTTAAGT
CAGGAAGAGCCGGGCAAAACCATTCAGCAGGGCGAGCTCATCAGTTTTTGGCGCAACCCTGTCAAAGTTTGGCTGAAGAA
AAATTTAAGCTGGGAACAGCCGTATCTGGACGGCGCATGGGAGTCTGCCGAACCGTTTGAGCCGCAACATGAAGGCCGGA
TTGCCGATGCCTATTTAGATGCACGGCGCAAAGGGGAAGATTTTGAAGATACGGCCATTCAGCTGAATGCCGAAAGCCTG
ATGCCGGTAGGCGAGTTGGGCGGTTTGTGGCAGAAGCAGTATCAGATATCTGCGAAAAACGTGGATGCCGAGCTGATACG
CAGCAATAAAAGGCCGTCTGAACCTTATGAAGAATCCTTTGACGACTTGGTTTTACAAGGCACCATCGGCAATCTTTATG
AGTGCGGCCGCATTGTGTTCCTAAATCAAAAAGACAATGCACCCAACCGCATTGCCCGTTTATTGGAGCATTTGATTTTT
TGCGCCGTCGCCCCTAAATCCGTTGCAAACCGACAAACCTATATTGTTAGCTTGGGAGAGACCGAAACCTATGCCGCCAT
CGAGCAACAAACAGCAAAAGAACTTTTGAAAGAATGGTTGGTATATTTCCGAATCGGACAAAATACCCCCTTGCCATTTT
TTGCCAAAACCAGTCTTGCCGCTGCGGAGGAGTACAACAAGAAAGAGGATTGGGATACTGCCTTGAGAAAAGCCCATGAG
GTTTTTAACGGCAACAAAATGAGCAAAGGGCAGAAAGAATATACCGAAGTGAAGCTGGTGTTTGGCCATTCGGACGAATC
GCCGCTTGATGAGCCGCTATTTGAAAACCTCATCGTCAATCTGCTTGTGCCGCTTTTGACCGGCGTGGCAGGGAAAACCG
ATACAACAGAACAGGAGTAA

Domains

Predicted by InterproScan.

RecC C-terminal domain (RecC_C)

(806-1024)

Exodeoxyribonuclease V, gamma subunit (Exonuc_V_gamma)

(2-312)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recC Neisseria gonorrhoeae strain FA1090

64.995

97.998

0.637