Detailed information    

insolico Bioinformatically predicted

Overview

Name   pepF   Type   Regulator
Locus tag   K210_RS08245 Genome accession   NC_021354
Coordinates   1681536..1683335 (+) Length   599 a.a.
NCBI ID   WP_003775546.1    Uniprot ID   E7FXK4
Organism   Erysipelothrix rhusiopathiae SY1027     
Function   degradation of XIP; competence shut-off (predicted from homology)   
Competence regulation

Genomic Context

Location: 1676536..1688335
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  K210_RS08200 (K210_08915) gatB 1677026..1678441 (+) 1416 WP_003775549.1 Asp-tRNA(Asn)/Glu-tRNA(Gln) amidotransferase subunit GatB -
  K210_RS08205 (K210_08920) - 1678461..1679156 (+) 696 WP_043892580.1 hypothetical protein -
  K210_RS08210 (K210_08925) - 1679491..1680456 (+) 966 WP_252856492.1 O-antigen ligase family protein -
  K210_RS08245 (K210_08930) pepF 1681536..1683335 (+) 1800 WP_003775546.1 oligoendopeptidase F Regulator
  K210_RS09990 (K210_08935) - 1683393..1683686 (-) 294 WP_353933461.1 CoA-binding protein -
  K210_RS09995 (K210_08940) - 1683602..1683784 (-) 183 WP_016357604.1 CoA-binding domain-containing protein -
  K210_RS08255 (K210_08945) - 1683781..1684383 (-) 603 WP_003775544.1 dienelactone hydrolase family protein -
  K210_RS10000 (K210_08950) - 1684454..1684897 (-) 444 WP_353933462.1 PTS sugar transporter subunit IIA -
  K210_RS08260 (K210_08955) - 1684879..1686330 (-) 1452 WP_016357606.1 transcription antiterminator -
  K210_RS08265 (K210_08960) - 1686394..1687212 (-) 819 WP_003775540.1 PTS system mannose/fructose/sorbose family transporter subunit IID -
  K210_RS08270 (K210_08965) - 1687205..1687975 (-) 771 WP_003775537.1 PTS sugar transporter subunit IIC -

Sequence

Protein


Download         Length: 599 a.a.        Molecular weight: 68618.43 Da        Isoelectric Point: 4.3664

>NTDB_id=58962 K210_RS08245 WP_003775546.1 1681536..1683335(+) (pepF) [Erysipelothrix rhusiopathiae SY1027]
MSDKYELPLRSEVDIKDTWDLTPMFKDDDAWNTEFDAIQNDLSEVAAYRGTLTKSAESLLAGLKFRDELSYRIEFLYVYA
HLSFDVDTTNPKYQAMNARVQSLLAQFGSSFSFYEAEILSADEAVIREYLESNEALSLYNHEFDRLFKSRPHILSEKEER
ILASLGEIFGVSSQTFGMLNNADIQFPTIKDESGNDVQLSHGRYSLLMESADRRVREDAFKAMQTTYGNLKNTLASTLSG
NVKVHNFNATIRNYASARQAALAANNIDEEVYDSLLEGIHNNINLLHDYVALREEALGIDDIQMYDIYVPMVDEVDLKFT
YEEAQEVILDALSVLGEEYCAVLKRAFDERWIDVVENKGKRSGAYSSGTYGSAPYILLNWQENIDNVFTLAHELGHSVHS
YFTRKYQPYIYGDYSIFVAEVASTTNENLLLNYLLDQYEDPKVRAYLLNHYLDTVKGTVFRQTQFAEFEHLIHKSDQEGV
ALTADYLIESYYKLNQFYYGESISTEEIGYEWARIPHFYYNYYVYQYATGFSAATLFSETIYNGGDATPYLDFLKSGSSD
YPINVLRKAGVDMTESTAVDTTLEKFGERMAELRTLLVK

Nucleotide


Download         Length: 1800 bp        

>NTDB_id=58962 K210_RS08245 WP_003775546.1 1681536..1683335(+) (pepF) [Erysipelothrix rhusiopathiae SY1027]
ATGTCGGATAAATATGAATTACCACTTCGTAGTGAAGTGGATATAAAAGATACATGGGATTTAACACCGATGTTTAAAGA
TGATGACGCATGGAATACAGAATTTGATGCGATTCAAAATGACTTAAGTGAAGTGGCTGCATACCGTGGTACTTTAACGA
AAAGCGCTGAAAGTTTGTTAGCGGGTCTTAAGTTTCGTGATGAATTAAGTTATCGTATTGAGTTTTTATATGTTTATGCA
CATTTAAGTTTTGATGTCGATACCACAAACCCTAAGTATCAAGCAATGAATGCGCGCGTGCAATCGCTTCTTGCGCAATT
TGGATCAAGTTTTTCGTTCTATGAAGCAGAGATTTTATCTGCCGATGAAGCTGTAATTCGAGAATATCTTGAATCGAATG
AAGCACTCAGTTTATATAATCATGAATTTGATCGTCTTTTCAAATCAAGACCACATATTCTTAGTGAAAAAGAAGAACGC
ATTCTTGCCTCATTAGGAGAAATCTTTGGTGTTTCTTCGCAGACATTTGGCATGTTGAATAATGCAGATATTCAATTCCC
TACAATTAAAGATGAATCGGGAAATGATGTTCAATTATCACACGGTCGTTATTCACTGTTAATGGAAAGTGCAGATCGAC
GTGTTCGTGAAGATGCTTTCAAAGCGATGCAAACAACTTATGGTAATTTAAAGAATACTCTTGCAAGTACGCTGTCGGGA
AATGTTAAGGTTCATAATTTCAATGCAACAATCCGTAATTATGCGTCGGCTCGTCAAGCTGCTCTTGCCGCAAATAATAT
TGACGAAGAAGTTTATGATTCCCTTTTAGAAGGAATTCATAATAATATTAACTTACTGCATGATTATGTAGCCCTTCGTG
AAGAGGCATTGGGTATTGATGATATTCAAATGTATGATATTTATGTCCCAATGGTTGATGAAGTGGATTTGAAGTTTACG
TATGAAGAAGCACAAGAAGTGATTTTGGACGCATTGAGTGTTCTTGGAGAAGAATATTGTGCTGTGTTGAAACGTGCCTT
TGATGAACGCTGGATTGATGTTGTTGAGAATAAAGGAAAACGATCGGGAGCCTATTCTTCAGGTACTTATGGAAGTGCAC
CGTATATTCTTTTAAACTGGCAAGAAAATATAGATAATGTGTTTACTCTTGCTCATGAGCTTGGACACAGTGTTCACTCG
TACTTTACGCGTAAGTATCAACCTTATATTTACGGAGATTATTCTATTTTTGTTGCTGAAGTTGCTTCCACAACGAATGA
GAATTTGCTGTTGAATTATTTGTTGGATCAATATGAGGATCCAAAGGTTCGTGCTTACTTGTTGAATCACTATTTAGACA
CGGTTAAAGGCACGGTGTTCCGTCAAACGCAGTTTGCTGAGTTTGAACACCTTATTCATAAATCAGACCAAGAGGGCGTT
GCTTTAACGGCTGATTATCTGATTGAGTCTTACTATAAACTCAATCAATTCTATTATGGTGAATCAATCAGCACTGAAGA
AATTGGTTATGAGTGGGCACGCATCCCTCATTTCTACTACAATTACTATGTTTACCAATATGCTACAGGATTTAGTGCAG
CAACTTTATTCAGTGAAACAATATATAATGGTGGTGATGCGACACCTTATCTTGATTTCTTGAAGTCAGGAAGTTCGGAT
TATCCTATTAATGTCCTTCGTAAGGCGGGCGTGGATATGACTGAATCGACTGCTGTTGATACTACGCTTGAGAAATTTGG
CGAACGTATGGCTGAATTACGAACATTACTTGTAAAATAG

Domains

Predicted by InterproScan.

Peptidase family M3 (Peptidase_M3)

(206-582)

Oligopeptidase F (Peptidase_M3_N)

(117-186)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB E7FXK4

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pepF Streptococcus salivarius strain HSISS4

49.241

98.998

0.487

Multiple sequence alignment