Detailed information    

insolico Bioinformatically predicted

Overview

Name   tonB2   Type   Machinery gene
Locus tag   EGT72_RS13500 Genome accession   NZ_CP079792
Coordinates   2728847..2729704 (-) Length   285 a.a.
NCBI ID   WP_125280266.1    Uniprot ID   -
Organism   Acinetobacter johnsonii strain AJ_082     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2723847..2734704
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  EGT72_RS13480 (EGT72_013480) miaB 2725180..2726637 (+) 1458 WP_010327568.1 tRNA (N6-isopentenyl adenosine(37)-C2)-methylthiotransferase MiaB -
  EGT72_RS13485 (EGT72_013485) - 2726676..2727752 (+) 1077 WP_125280237.1 PhoH family protein -
  EGT72_RS13490 (EGT72_013490) ybeY 2727810..2728289 (+) 480 WP_004691232.1 rRNA maturation RNase YbeY -
  EGT72_RS13495 (EGT72_013495) - 2728391..2728801 (+) 411 WP_125280238.1 hypothetical protein -
  EGT72_RS13500 (EGT72_013500) tonB2 2728847..2729704 (-) 858 WP_125280266.1 TonB family protein Machinery gene
  EGT72_RS13505 (EGT72_013505) - 2729965..2730642 (+) 678 WP_004977854.1 hypothetical protein -
  EGT72_RS13510 (EGT72_013510) - 2730798..2731508 (+) 711 WP_078426185.1 DUF3108 domain-containing protein -
  EGT72_RS13515 (EGT72_013515) - 2731599..2732174 (+) 576 WP_004691243.1 xanthine phosphoribosyltransferase -
  EGT72_RS13520 (EGT72_013520) - 2732555..2733502 (+) 948 WP_125280239.1 sensor domain-containing diguanylate cyclase -
  EGT72_RS13525 (EGT72_013525) - 2733715..2734089 (+) 375 WP_029575121.1 hypothetical protein -

Sequence

Protein


Download         Length: 285 a.a.        Molecular weight: 32588.02 Da        Isoelectric Point: 6.6632

>NTDB_id=589527 EGT72_RS13500 WP_125280266.1 2728847..2729704(-) (tonB2) [Acinetobacter johnsonii strain AJ_082]
MPLAHDWWKDPIFTATVVLAVFLHLVVLTLQFAMPQENDASVKEIAVTLRPSDKKNENADFLAQADQQGSGTFRESHRMS
SDMPAPMLEQSTGEQQRETLEQIQQKRELNFEEKLLMTTLSWQKQAEDNQRKKAMEEMNSQFQAKAAMVASLEAQYLQRQ
QNFSRQQKIKTVDGIQAKQDISAAYLEKFRQKVEFYGNRYYPEAAKQQRLAGEVRLMVILNGSGGIRAIRLIDSSGHEML
DEAAKASVRKAAPFGGFDAKMKDISELRIVRTWRFDPAEAEFEVH

Nucleotide


Download         Length: 858 bp        

>NTDB_id=589527 EGT72_RS13500 WP_125280266.1 2728847..2729704(-) (tonB2) [Acinetobacter johnsonii strain AJ_082]
ATGCCTTTGGCTCATGATTGGTGGAAAGACCCAATTTTTACAGCGACTGTTGTGCTGGCGGTGTTTTTGCATCTTGTAGT
TTTAACTTTGCAATTTGCGATGCCTCAAGAAAATGATGCGTCAGTGAAAGAAATTGCGGTGACTTTGCGTCCTTCTGATA
AAAAAAATGAAAATGCAGATTTTTTAGCACAAGCCGATCAACAAGGTTCAGGGACATTTCGTGAGTCACATCGCATGTCG
AGTGACATGCCCGCACCGATGCTTGAGCAAAGTACAGGCGAACAGCAGCGTGAAACTTTAGAACAGATCCAACAAAAACG
TGAGCTGAACTTTGAAGAAAAACTGTTGATGACGACTTTAAGTTGGCAAAAACAAGCTGAGGATAACCAGCGCAAAAAAG
CCATGGAAGAAATGAACAGTCAGTTTCAAGCCAAAGCAGCAATGGTAGCCAGCCTTGAAGCACAATATTTACAACGCCAA
CAAAACTTTAGCCGTCAGCAAAAAATTAAAACAGTCGATGGTATTCAAGCCAAGCAAGATATTTCGGCCGCCTATCTTGA
AAAGTTCCGTCAGAAAGTGGAATTTTATGGCAACCGTTACTATCCAGAAGCAGCTAAACAGCAGCGGCTGGCGGGTGAAG
TGCGTTTAATGGTGATTCTAAATGGATCAGGAGGCATCCGCGCCATTCGCCTGATTGATAGTTCAGGCCATGAGATGCTC
GATGAGGCTGCAAAAGCCTCAGTGCGTAAAGCCGCACCATTCGGTGGGTTTGATGCCAAAATGAAGGATATTTCTGAGTT
ACGCATTGTGCGTACATGGCGTTTTGACCCAGCAGAGGCGGAGTTTGAAGTGCACTGA

Domains

Predicted by InterproScan.

Gram-negative bacterial TonB protein C-terminal (TonB_C)

(198-257)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  tonB2 Acinetobacter baumannii D1279779

74.286

98.246

0.73