Detailed information    

insolico Bioinformatically predicted

Overview

Name   priA   Type   Machinery gene
Locus tag   EGT72_RS01820 Genome accession   NZ_CP079792
Coordinates   381613..383835 (-) Length   740 a.a.
NCBI ID   WP_125280758.1    Uniprot ID   A0AA42MQQ1
Organism   Acinetobacter johnsonii strain AJ_082     
Function   DNA puliing through the inner membrane (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 376613..388835
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  EGT72_RS01800 (EGT72_001800) - 377249..377713 (-) 465 WP_125281017.1 DUF2147 domain-containing protein -
  EGT72_RS01805 (EGT72_001805) - 377893..378605 (+) 713 Protein_339 IS5 family transposase -
  EGT72_RS01810 (EGT72_001810) - 378763..379638 (-) 876 WP_125280756.1 Hsp33 family molecular chaperone HslO -
  EGT72_RS01815 (EGT72_001815) - 379689..381530 (-) 1842 WP_125280757.1 monovalent cation:proton antiporter-2 (CPA2) family protein -
  EGT72_RS01820 (EGT72_001820) priA 381613..383835 (-) 2223 WP_125280758.1 primosomal protein N' Machinery gene
  EGT72_RS01825 (EGT72_001825) gspF 383988..385193 (+) 1206 WP_125280759.1 type II secretion system inner membrane protein GspF -
  EGT72_RS01830 (EGT72_001830) gspG 385227..385664 (+) 438 WP_086209809.1 type II secretion system major pseudopilin GspG -
  EGT72_RS01835 (EGT72_001835) - 385947..386282 (+) 336 WP_004978824.1 hypothetical protein -
  EGT72_RS01840 (EGT72_001840) - 386442..386780 (+) 339 WP_125280760.1 tRNA-binding protein -
  EGT72_RS01845 (EGT72_001845) lnt 386847..388406 (-) 1560 WP_125280761.1 apolipoprotein N-acyltransferase -

Sequence

Protein


Download         Length: 740 a.a.        Molecular weight: 84202.15 Da        Isoelectric Point: 8.9695

>NTDB_id=589508 EGT72_RS01820 WP_125280758.1 381613..383835(-) (priA) [Acinetobacter johnsonii strain AJ_082]
MPENTLSTTPSYRIRVAVPVYLYDCFDYSLTAEQYHQAEVGARVAVSFGRQNVVGVIVEKLTDEKPLDLGFKLKAITELL
DDSAILDAKVLSLLTWSAQYYQFPIGEVMHAALPSFLRQGKPYNLLARMWKLIDDHAEDKLKRSEKQQDAYKILKLHPTG
TSENILNLAGIETATLKALEKKKITQCILEAQDFKPQAMTLAQMPLTPNDEQKRAIQNILKARHSYHAFLLDGLTGSGKT
EVYLQVMQEVLKQGKQVLVLVPEIGLTPQTVSRFQSRFHCHIALLHSGLNDSKRLQAWQSAQTGRASIVIGTRSAIYTPL
PHLGLIILDEEHDLSFKQQEGFRYHARDVALYRAHLENCPIILGSATPSIDSYALVEQGKMTRLELDQRAGVAVMPKMHV
IDLKVAQKQNGISQQLIHEVQKRLDKKEQVLIFLNRRGYAPVLICESCGWQAKCPHCDANFTVHRQPYQHLHCHHCGTIH
RMPEHCPQCQHSELKPIGLGTAKVEENLQALFPNFDVIRVDRDSTSRVGSWQKIYNKIQKSEPIILLGTQMLAKGHHFPY
VTLVAILDIDSGLLSVDFRATERTAQLIIQVAGRAGRGEKKGEVYLQTLRPDHPLLNTLLESGYRSFAKQTLKERKAAWM
PPYRYAALLRCESKDQELNQSFLQEHAQVLRQASENSIDIWGPIPAPMERKAGRYQAHMVLLSKDRPRMHFYIRQWWQNV
WHNKPHGMKLSLDIDPQELS

Nucleotide


Download         Length: 2223 bp        

>NTDB_id=589508 EGT72_RS01820 WP_125280758.1 381613..383835(-) (priA) [Acinetobacter johnsonii strain AJ_082]
ATGCCAGAAAATACACTTTCCACCACACCAAGCTACCGTATTCGTGTGGCTGTTCCCGTTTATCTATATGACTGTTTTGA
CTATAGTTTAACGGCTGAACAATACCACCAAGCTGAAGTGGGTGCACGTGTGGCTGTCTCATTTGGTCGCCAAAATGTGG
TCGGTGTCATTGTTGAGAAACTCACTGATGAGAAACCACTCGATTTAGGCTTTAAACTCAAAGCCATAACTGAGTTGCTC
GATGACAGCGCTATTCTAGATGCTAAAGTTTTAAGTTTATTGACATGGTCAGCGCAATATTACCAATTTCCCATTGGTGA
AGTGATGCATGCTGCTTTGCCCAGCTTTTTACGCCAAGGCAAACCCTATAATTTACTGGCGCGGATGTGGAAGCTGATTG
ATGATCATGCCGAAGACAAATTGAAGCGTTCTGAAAAACAACAAGATGCCTATAAAATTTTAAAGCTACATCCTACAGGA
ACGTCTGAAAACATTCTAAATTTGGCTGGCATTGAAACTGCGACCTTAAAAGCCTTAGAAAAAAAGAAAATCACCCAGTG
CATACTTGAAGCCCAAGACTTTAAACCGCAAGCCATGACACTGGCACAAATGCCCCTCACGCCCAATGATGAACAAAAGC
GTGCCATTCAAAATATTCTCAAAGCTCGTCATAGCTACCACGCTTTCTTACTGGATGGTTTAACCGGTAGTGGCAAAACT
GAAGTCTACTTGCAAGTCATGCAAGAGGTTTTAAAACAAGGCAAACAAGTTTTGGTATTAGTGCCTGAAATTGGCCTCAC
CCCACAAACAGTGAGTCGTTTTCAGTCACGTTTTCACTGTCATATTGCGCTACTACATTCAGGTTTAAATGATTCTAAGC
GCCTTCAAGCCTGGCAAAGCGCACAAACAGGCAGAGCTTCGATTGTGATTGGCACACGTTCTGCCATCTATACGCCCCTT
CCACATTTGGGTTTGATTATCTTAGATGAAGAACATGACTTATCTTTCAAGCAACAAGAAGGCTTCCGCTACCACGCTCG
TGATGTGGCTTTATACCGTGCACACTTAGAAAACTGTCCGATTATCCTCGGTTCTGCAACGCCAAGTATCGACAGTTATG
CGTTGGTCGAACAAGGTAAAATGACCCGTTTGGAGTTGGACCAACGTGCAGGTGTGGCCGTGATGCCGAAAATGCATGTG
ATCGATCTGAAAGTGGCACAAAAACAAAATGGCATCAGCCAACAGCTGATTCATGAAGTACAAAAGCGCTTAGACAAAAA
AGAACAGGTGCTGATTTTTTTAAACCGTCGCGGCTATGCGCCTGTGTTGATTTGTGAAAGTTGTGGCTGGCAGGCCAAGT
GCCCCCACTGCGATGCCAATTTTACCGTGCATCGACAGCCCTATCAGCATTTGCACTGTCACCACTGCGGCACCATCCAC
CGCATGCCTGAACATTGTCCGCAATGCCAGCATAGCGAACTGAAACCAATTGGTTTAGGCACCGCAAAAGTTGAAGAAAA
CCTACAAGCACTGTTCCCCAACTTTGATGTAATTCGGGTGGATCGTGACTCGACCAGTCGGGTCGGTAGTTGGCAAAAAA
TCTATAACAAGATTCAGAAAAGTGAACCCATCATTTTGCTCGGTACTCAAATGCTGGCCAAAGGACATCACTTTCCTTAT
GTGACTTTGGTGGCGATTTTAGACATTGACTCAGGCTTACTCAGTGTTGACTTTCGTGCCACAGAACGTACTGCACAGCT
CATCATCCAAGTTGCGGGACGTGCTGGGCGCGGTGAGAAAAAAGGCGAAGTGTATTTACAAACTTTACGTCCAGACCATC
CTTTGCTGAATACCCTGCTAGAATCGGGCTATCGCAGCTTTGCCAAGCAAACGTTGAAAGAACGTAAAGCTGCATGGATG
CCACCTTATCGCTATGCGGCTTTATTGCGCTGTGAATCCAAAGACCAAGAACTGAACCAAAGCTTTTTACAAGAGCATGC
ACAAGTACTGCGCCAAGCCTCAGAAAACAGTATTGATATTTGGGGGCCCATTCCTGCGCCGATGGAACGTAAAGCAGGCC
GCTATCAAGCGCATATGGTACTACTGTCCAAAGACCGTCCGCGGATGCATTTTTACATTCGTCAGTGGTGGCAAAATGTC
TGGCATAACAAACCGCATGGTATGAAATTGAGCCTTGATATTGATCCACAAGAGTTAAGTTAA

Domains

Predicted by InterproScan.

DEAD/DEAH box helicase (DEAD)

(210-371)

Primosomal protein N C-terminal domain (PriA_C)

(642-736)

3DNA-binding domain (3BD) (PriA_3primeBD)

(15-114)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  priA Acinetobacter baumannii D1279779

71.819

98.784

0.709