Detailed information    

insolico Bioinformatically predicted

Overview

Name   hns   Type   Regulator
Locus tag   EGT72_RS01265 Genome accession   NZ_CP079792
Coordinates   261939..262286 (+) Length   115 a.a.
NCBI ID   WP_171056712.1    Uniprot ID   -
Organism   Acinetobacter johnsonii strain AJ_082     
Function   repress the expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 256939..267286
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  EGT72_RS01240 (EGT72_001240) hemC 257626..258546 (+) 921 WP_125280610.1 hydroxymethylbilane synthase -
  EGT72_RS01245 (EGT72_001245) - 258559..259338 (+) 780 WP_125280609.1 uroporphyrinogen-III synthase -
  EGT72_RS01250 (EGT72_001250) - 259335..260177 (+) 843 WP_125280608.1 hypothetical protein -
  EGT72_RS01255 (EGT72_001255) - 260182..261375 (+) 1194 WP_125280607.1 heme biosynthesis protein HemY -
  EGT72_RS01260 (EGT72_001260) - 261383..261811 (+) 429 WP_125273404.1 thioesterase family protein -
  EGT72_RS01265 (EGT72_001265) hns 261939..262286 (+) 348 WP_171056712.1 H-NS histone family protein Regulator
  EGT72_RS01270 (EGT72_001270) gspN 262483..263193 (+) 711 WP_125280643.1 type II secretion system protein N -
  EGT72_RS01275 (EGT72_001275) - 263193..264017 (+) 825 WP_125280606.1 type II secretion system protein N -
  EGT72_RS01280 (EGT72_001280) gspD 264057..266417 (+) 2361 WP_125280605.1 type II secretion system secretin GspD -
  EGT72_RS01285 (EGT72_001285) - 266505..267248 (+) 744 WP_125280604.1 FHA domain-containing protein -

Sequence

Protein


Download         Length: 115 a.a.        Molecular weight: 12852.75 Da        Isoelectric Point: 9.5383

>NTDB_id=589504 EGT72_RS01265 WP_171056712.1 261939..262286(+) (hns) [Acinetobacter johnsonii strain AJ_082]
MLVNGVNVMPDISNLSVEELKRLQIEAEALIASKKDQAIEDAYTQINAIAENVGLSIEQILEFGATKRKKGTRKSVEPRY
RNKGNAAETWTGRGKQPRWLVAQLEKGAKLEDFLI

Nucleotide


Download         Length: 348 bp        

>NTDB_id=589504 EGT72_RS01265 WP_171056712.1 261939..262286(+) (hns) [Acinetobacter johnsonii strain AJ_082]
ATGTTGGTTAATGGAGTTAATGTAATGCCAGATATTAGTAATTTATCCGTAGAAGAGTTAAAGCGTCTACAAATCGAAGC
GGAAGCTTTAATTGCATCTAAAAAAGATCAAGCAATTGAAGATGCTTATACTCAAATTAACGCGATTGCGGAAAATGTAG
GCTTAAGCATTGAACAAATTTTAGAGTTTGGCGCGACCAAGCGTAAAAAAGGCACACGTAAGTCGGTTGAACCGCGTTAC
CGTAACAAAGGCAATGCTGCTGAGACATGGACTGGCCGTGGTAAGCAACCACGTTGGTTAGTGGCTCAGTTGGAAAAAGG
TGCGAAGCTTGAAGATTTTCTAATCTAA

Domains

Predicted by InterproScan.

H-NS histone family (Histone_HNS)

(19-109)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  hns Acinetobacter baumannii strain A118

86.792

92.174

0.8