Detailed information    

insolico Bioinformatically predicted

Overview

Name   tsaP   Type   Machinery gene
Locus tag   EGT72_RS00865 Genome accession   NZ_CP079792
Coordinates   173054..174208 (-) Length   384 a.a.
NCBI ID   WP_125281524.1    Uniprot ID   A0AA42MRI8
Organism   Acinetobacter johnsonii strain AJ_082     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 168054..179208
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  EGT72_RS00840 (EGT72_000840) - 168404..168949 (-) 546 WP_125281519.1 glutathione peroxidase -
  EGT72_RS00845 (EGT72_000845) - 169073..169627 (-) 555 WP_125281520.1 hypothetical protein -
  EGT72_RS00850 (EGT72_000850) - 169963..170883 (+) 921 WP_125281521.1 DMT family transporter -
  EGT72_RS00855 (EGT72_000855) - 171283..171852 (-) 570 WP_125281522.1 Sua5/YciO/YrdC/YwlC family protein -
  EGT72_RS00860 (EGT72_000860) dprA 171898..173031 (-) 1134 WP_125281523.1 DNA-processing protein DprA Machinery gene
  EGT72_RS00865 (EGT72_000865) tsaP 173054..174208 (-) 1155 WP_125281524.1 LysM peptidoglycan-binding domain-containing protein Machinery gene
  EGT72_RS00870 (EGT72_000870) def 174329..174862 (+) 534 WP_004684452.1 peptide deformylase -
  EGT72_RS00875 (EGT72_000875) - 174953..175390 (+) 438 WP_078389804.1 DUF2946 family protein -
  EGT72_RS00880 (EGT72_000880) - 175463..177490 (+) 2028 WP_125281525.1 TonB-dependent copper receptor -

Sequence

Protein


Download         Length: 384 a.a.        Molecular weight: 42294.31 Da        Isoelectric Point: 8.2072

>NTDB_id=589499 EGT72_RS00865 WP_125281524.1 173054..174208(-) (tsaP) [Acinetobacter johnsonii strain AJ_082]
MKKVFMGMPSFSALGFKQHMLALAVCVSVGAGVISTAQAAPTRNYNPPALKANAPNVYVVKKGDTLWDISKRFLNNPVRW
PEIWASNRHVKNPHWIFPGDRLLMCTYEGRPIIGKDEGDGCEGIIRRYTGGTKLQPQARVESLNNAIPVIPLEYIKNWLE
HSTILSEESLKGTPYIVGAADERVIAGKGQTVYARGQGIEVGQRYAIYREGEPYIVTDAEGKKQNLGLELTQVASAIAIR
GENDMSTLEITDSYNSEVRRGYRVLPEYDAMLPTLFYPTHAQDVTGGGQVIRVQGSIGLAAKHSVVTIDRGTVDGVQSGY
VFSVSQKGQEIRDPKTNEKLTLPTERIGNIMVFKTFDRVSYAYVLDSELPMNLGAKISPSVVDE

Nucleotide


Download         Length: 1155 bp        

>NTDB_id=589499 EGT72_RS00865 WP_125281524.1 173054..174208(-) (tsaP) [Acinetobacter johnsonii strain AJ_082]
ATGAAAAAGGTTTTTATGGGCATGCCATCTTTTAGTGCCTTGGGGTTTAAGCAACACATGTTAGCACTTGCGGTTTGCGT
AAGTGTTGGCGCAGGCGTCATTTCAACAGCTCAAGCTGCACCTACACGAAATTACAATCCACCTGCTTTAAAAGCCAATG
CACCAAATGTTTACGTGGTGAAAAAAGGCGATACCCTTTGGGATATTTCTAAACGTTTCCTAAACAATCCTGTGCGTTGG
CCTGAAATTTGGGCTAGCAATAGACACGTCAAAAATCCGCATTGGATTTTCCCAGGTGACCGTTTATTGATGTGTACCTA
TGAAGGTCGTCCAATTATTGGTAAAGATGAAGGTGATGGCTGTGAAGGAATTATTCGTCGTTATACAGGCGGCACTAAAC
TTCAACCTCAAGCACGCGTTGAGTCTTTAAACAATGCCATTCCTGTCATTCCACTGGAATACATTAAAAACTGGCTTGAA
CACAGCACTATTCTTTCAGAGGAATCTTTGAAAGGTACACCGTATATAGTGGGTGCTGCCGATGAGCGTGTGATTGCAGG
TAAAGGCCAAACCGTTTATGCACGAGGCCAAGGCATTGAAGTCGGTCAACGCTACGCAATTTACCGTGAAGGCGAACCGT
ACATTGTGACGGATGCAGAGGGCAAAAAACAAAATCTAGGTCTAGAATTGACTCAGGTTGCTTCAGCCATTGCCATTCGT
GGTGAAAATGACATGTCCACTTTAGAAATCACAGATTCGTATAATTCTGAAGTACGTCGTGGTTATCGCGTACTGCCTGA
ATACGACGCCATGCTTCCAACCTTGTTCTACCCAACACATGCACAAGATGTGACTGGGGGTGGACAAGTGATTCGTGTTC
AAGGTTCGATTGGTCTAGCGGCGAAGCATTCAGTTGTAACCATTGACCGTGGCACAGTGGATGGCGTTCAATCGGGTTAT
GTGTTCTCAGTGAGTCAAAAGGGTCAAGAAATTCGTGATCCGAAAACCAATGAAAAACTGACCCTTCCAACGGAGCGTAT
CGGCAACATCATGGTCTTTAAAACCTTTGACCGTGTCAGCTATGCCTATGTGCTCGACAGCGAACTACCAATGAACTTGG
GCGCGAAAATTTCTCCCTCTGTCGTGGATGAATAA

Domains

Predicted by InterproScan.

LysM domain (LysM)

(58-102)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  tsaP Acinetobacter baumannii D1279779

66.234

100

0.664