Detailed information    

insolico Bioinformatically predicted

Overview

Name   sxy/tfoX   Type   Regulator
Locus tag   KYX57_RS08880 Genome accession   NZ_CP079772
Coordinates   1764667..1765296 (-) Length   209 a.a.
NCBI ID   WP_000839153.1    Uniprot ID   A0A9Q6Y251
Organism   Escherichia coli strain GS04     
Function   positive regulator of competence gene (predicted from homology)   
Competence regulation

Genomic Context

Location: 1759667..1770296
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  KYX57_RS08865 (KYX57_08855) helD 1759909..1761963 (-) 2055 WP_001295354.1 DNA helicase IV -
  KYX57_RS08870 (KYX57_08860) yccF 1762086..1762532 (+) 447 WP_001261235.1 YccF domain-containing protein -
  KYX57_RS08875 (KYX57_08865) yccS 1762542..1764704 (+) 2163 WP_000875061.1 YccS family putative transporter -
  KYX57_RS08880 (KYX57_08870) sxy/tfoX 1764667..1765296 (-) 630 WP_000839153.1 CRP-S regulon transcriptional coactivator Sxy Regulator
  KYX57_RS08885 (KYX57_08875) sulA 1765515..1766024 (+) 510 WP_001554869.1 SOS-induced cell division inhibitor SulA -
  KYX57_RS08890 (KYX57_08880) ompA 1766381..1767421 (+) 1041 WP_001340343.1 porin OmpA -
  KYX57_RS08895 (KYX57_08885) matP 1767498..1767950 (-) 453 WP_000877161.1 macrodomain Ter protein MatP -
  KYX57_RS08900 (KYX57_08890) ycbZ 1768136..1769896 (+) 1761 WP_000156518.1 Lon protease family protein -

Sequence

Protein


Download         Length: 209 a.a.        Molecular weight: 24147.02 Da        Isoelectric Point: 9.2180

>NTDB_id=589433 KYX57_RS08880 WP_000839153.1 1764667..1765296(-) (sxy/tfoX) [Escherichia coli strain GS04]
MKSLSYKRIYKSQEYLATLGTIEYRSLFGSYSLTVDDTVFAMVSDGELYLRACEQSAQYCVKHPPVWLTYKKCGRSVTLN
YYRVDESLWRNQLKLVRLSKYSLDAALKEKSTRNTRERLKDLPNMSFHLEAILGEVGIKDVRALRILGAKMCWLRLRQQN
SLVTEKILFMLEGAIIGIHEAALPVARRQELAEWADSLTPKQEFPAELE

Nucleotide


Download         Length: 630 bp        

>NTDB_id=589433 KYX57_RS08880 WP_000839153.1 1764667..1765296(-) (sxy/tfoX) [Escherichia coli strain GS04]
ATGAAAAGCCTCTCCTATAAGCGGATCTATAAATCACAAGAATACCTGGCAACGTTGGGCACAATTGAATACCGATCATT
GTTTGGCAGTTACAGCCTGACCGTTGACGACACGGTGTTTGCGATGGTTTCTGATGGTGAGTTGTATCTTCGGGCTTGTG
AGCAAAGTGCACAGTACTGTGTAAAACATCCGCCTGTCTGGCTGACATATAAAAAGTGTGGCCGATCCGTTACCCTCAAT
TACTATCGGGTTGATGAAAGTCTATGGCGAAATCAACTGAAGCTGGTGCGTCTGTCGAAATATTCTCTCGATGCAGCGCT
GAAAGAGAAAAGCACGCGCAATACCCGGGAAAGACTGAAAGATTTGCCCAATATGTCTTTTCATCTGGAAGCGATTCTCG
GGGAGGTGGGGATTAAGGATGTACGGGCGTTACGTATACTTGGGGCAAAAATGTGTTGGTTGCGACTGCGGCAGCAAAAC
AGTCTGGTGACAGAAAAGATTCTGTTTATGCTTGAAGGTGCCATTATCGGCATTCATGAAGCTGCGCTCCCGGTGGCACG
CCGCCAGGAGCTTGCAGAATGGGCTGACTCTCTTACGCCGAAACAGGAGTTTCCTGCGGAACTTGAGTAA

Domains

Predicted by InterproScan.

TfoX N-terminal domain (TfoX_N)

(14-106)

TfoX C-terminal domain (TfoX_C)

(116-194)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sxy/tfoX Escherichia coli BW25113 strain K-12

100

100

1