Detailed information    

insolico Bioinformatically predicted

Overview

Name   sxy/tfoX   Type   Regulator
Locus tag   KYX58_RS10435 Genome accession   NZ_CP079770
Coordinates   1767309..1767938 (-) Length   209 a.a.
NCBI ID   WP_000839153.1    Uniprot ID   A0A9Q6Y251
Organism   Escherichia coli strain HL15     
Function   positive regulator of competence gene (predicted from homology)   
Competence regulation

Genomic Context

Location: 1762309..1772938
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  KYX58_RS10420 (KYX58_10370) helD 1762551..1764605 (-) 2055 WP_001295354.1 DNA helicase IV -
  KYX58_RS10425 (KYX58_10375) yccF 1764728..1765174 (+) 447 WP_001261235.1 YccF domain-containing protein -
  KYX58_RS10430 (KYX58_10380) yccS 1765184..1767346 (+) 2163 WP_000875061.1 YccS family putative transporter -
  KYX58_RS10435 (KYX58_10385) sxy/tfoX 1767309..1767938 (-) 630 WP_000839153.1 CRP-S regulon transcriptional coactivator Sxy Regulator
  KYX58_RS10440 (KYX58_10390) sulA 1768157..1768666 (+) 510 WP_000288710.1 SOS-induced cell division inhibitor SulA -
  KYX58_RS10445 (KYX58_10395) ompA 1769023..1770063 (+) 1041 WP_000750416.1 porin OmpA -
  KYX58_RS10450 (KYX58_10400) matP 1770139..1770591 (-) 453 WP_000877161.1 macrodomain Ter protein MatP -
  KYX58_RS10455 (KYX58_10405) ycbZ 1770777..1772537 (+) 1761 WP_000156518.1 Lon protease family protein -

Sequence

Protein


Download         Length: 209 a.a.        Molecular weight: 24147.02 Da        Isoelectric Point: 9.2180

>NTDB_id=589409 KYX58_RS10435 WP_000839153.1 1767309..1767938(-) (sxy/tfoX) [Escherichia coli strain HL15]
MKSLSYKRIYKSQEYLATLGTIEYRSLFGSYSLTVDDTVFAMVSDGELYLRACEQSAQYCVKHPPVWLTYKKCGRSVTLN
YYRVDESLWRNQLKLVRLSKYSLDAALKEKSTRNTRERLKDLPNMSFHLEAILGEVGIKDVRALRILGAKMCWLRLRQQN
SLVTEKILFMLEGAIIGIHEAALPVARRQELAEWADSLTPKQEFPAELE

Nucleotide


Download         Length: 630 bp        

>NTDB_id=589409 KYX58_RS10435 WP_000839153.1 1767309..1767938(-) (sxy/tfoX) [Escherichia coli strain HL15]
ATGAAAAGCCTCTCCTATAAGCGGATCTATAAATCACAAGAATACCTGGCAACGTTGGGCACAATTGAATACCGATCATT
GTTTGGCAGTTACAGCCTGACCGTTGACGACACGGTGTTTGCGATGGTTTCTGATGGTGAGTTGTATCTTCGGGCTTGTG
AGCAAAGTGCACAGTACTGTGTAAAACATCCGCCTGTCTGGCTGACATATAAAAAGTGTGGCCGATCCGTTACCCTCAAT
TACTATCGGGTTGATGAAAGTCTATGGCGAAATCAACTGAAGCTGGTGCGTCTGTCGAAATATTCTCTCGATGCAGCGCT
GAAAGAGAAAAGCACGCGCAATACCCGGGAAAGACTGAAAGATTTGCCCAATATGTCTTTTCATCTGGAAGCGATTCTCG
GGGAGGTGGGGATTAAGGATGTACGGGCGTTACGTATACTTGGGGCAAAAATGTGTTGGTTGCGACTGCGGCAGCAAAAC
AGTCTGGTGACAGAAAAGATTCTGTTTATGCTTGAAGGTGCCATTATCGGCATTCATGAAGCTGCGCTCCCGGTGGCACG
CCGCCAGGAGCTTGCAGAATGGGCTGACTCTCTTACGCCGAAACAGGAGTTTCCTGCGGAACTTGAGTAA

Domains

Predicted by InterproScan.

TfoX N-terminal domain (TfoX_N)

(14-106)

TfoX C-terminal domain (TfoX_C)

(116-194)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sxy/tfoX Escherichia coli BW25113 strain K-12

100

100

1