Detailed information    

insolico Bioinformatically predicted

Overview

Name   comA   Type   Regulator
Locus tag   KXZ66_RS16375 Genome accession   NZ_CP079759
Coordinates   3159516..3160160 (-) Length   214 a.a.
NCBI ID   WP_003220716.1    Uniprot ID   -
Organism   Bacillus sp. LJBS17     
Function   promoting transcription of comS (predicted from homology)   
Competence regulation

Genomic Context

Location: 3154516..3165160
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  KXZ66_RS16340 (KXZ66_16335) - 3155708..3156139 (+) 432 WP_003228819.1 Na(+)/H(+) antiporter subunit B -
  KXZ66_RS16345 (KXZ66_16340) - 3156139..3156480 (+) 342 WP_003220730.1 Na(+)/H(+) antiporter subunit C -
  KXZ66_RS16350 (KXZ66_16345) - 3156473..3157954 (+) 1482 WP_032726793.1 Na+/H+ antiporter subunit D -
  KXZ66_RS16355 (KXZ66_16350) - 3157960..3158436 (+) 477 WP_003228815.1 Na+/H+ antiporter subunit E -
  KXZ66_RS16360 (KXZ66_16355) - 3158436..3158720 (+) 285 WP_003228814.1 Na(+)/H(+) antiporter subunit F1 -
  KXZ66_RS16365 (KXZ66_16360) mnhG 3158704..3159078 (+) 375 WP_014477830.1 monovalent cation/H(+) antiporter subunit G -
  KXZ66_RS16370 (KXZ66_16365) - 3159117..3159497 (-) 381 WP_017695528.1 hotdog fold thioesterase -
  KXZ66_RS16375 (KXZ66_16370) comA 3159516..3160160 (-) 645 WP_003220716.1 two-component system response regulator ComA Regulator
  KXZ66_RS16380 (KXZ66_16375) comP 3160241..3162551 (-) 2311 Protein_3187 two-component system sensor histidine kinase ComP -
  KXZ66_RS16385 (KXZ66_16380) comX 3162566..3162733 (-) 168 WP_003242801.1 competence pheromone ComX Regulator
  KXZ66_RS16390 (KXZ66_16385) comQ 3162721..3163620 (-) 900 WP_015251332.1 ComX modifying isoprenyl transferase ComQ Regulator
  KXZ66_RS16395 (KXZ66_16390) degQ 3163805..3163945 (-) 141 WP_003220708.1 degradation enzyme regulation protein DegQ Regulator
  KXZ66_RS22655 - 3164167..3164229 (+) 63 Protein_3191 hypothetical protein -
  KXZ66_RS16400 (KXZ66_16395) - 3164407..3164775 (+) 369 WP_038828672.1 hypothetical protein -

Sequence

Protein


Download         Length: 214 a.a.        Molecular weight: 24128.51 Da        Isoelectric Point: 4.6857

>NTDB_id=589342 KXZ66_RS16375 WP_003220716.1 3159516..3160160(-) (comA) [Bacillus sp. LJBS17]
MKKILVIDDHPAVMEGTKTILETDSNLSVDCLSPEPSEQFIKQHDFSSYDLILMDLNLGGEVNGMELSKQILQENPHCKI
IVYTGYEVEDYFEEAIRAGLHGAISKTESKEKITQYIYHVLNGEILVDFAYFKQLMTQQKTKPAPSSQKEQDVLTPRECL
ILQEVEKGFTNQEIADALHLSKRSIEYSLTSIFNKLNVGSRTEAVLIAKSDGVL

Nucleotide


Download         Length: 645 bp        

>NTDB_id=589342 KXZ66_RS16375 WP_003220716.1 3159516..3160160(-) (comA) [Bacillus sp. LJBS17]
ATGAAAAAGATACTAGTGATTGATGACCATCCGGCTGTCATGGAAGGCACCAAGACAATTTTGGAAACGGATTCGAATTT
GTCTGTTGATTGTCTCAGTCCTGAACCGAGCGAACAGTTTATCAAGCAGCATGATTTCTCGTCATATGATCTCATTTTAA
TGGATCTGAATTTAGGCGGCGAGGTCAATGGGATGGAGCTTTCTAAACAGATTTTACAAGAGAATCCTCATTGTAAAATT
ATCGTGTATACCGGTTATGAGGTCGAGGATTATTTCGAGGAAGCGATTCGTGCGGGTCTGCACGGTGCCATCAGCAAAAC
GGAATCTAAAGAAAAGATCACCCAATACATATACCACGTACTCAACGGAGAAATTTTAGTCGATTTTGCTTACTTTAAAC
AGCTGATGACTCAGCAAAAAACAAAGCCGGCTCCTTCCTCTCAAAAAGAACAAGATGTGCTCACACCTAGAGAATGCCTG
ATTCTTCAAGAAGTTGAAAAGGGATTTACAAACCAAGAAATCGCAGATGCCCTTCATTTAAGCAAGCGGTCCATTGAATA
CAGCTTGACATCGATTTTCAATAAGCTGAATGTCGGTTCACGGACGGAAGCGGTTTTGATTGCGAAATCAGACGGTGTAC
TTTAA

Domains

Predicted by InterproScan.

Bacterial regulatory proteins, luxR family (GerE)

(152-208)

Response regulator receiver domain (Response_reg)

(4-117)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comA Bacillus subtilis subsp. subtilis str. 168

100

100

1