Detailed information    

insolico Bioinformatically predicted

Overview

Name   comC   Type   Machinery gene
Locus tag   KXZ66_RS14480 Genome accession   NZ_CP079759
Coordinates   2782205..2782951 (-) Length   248 a.a.
NCBI ID   WP_219144604.1    Uniprot ID   -
Organism   Bacillus sp. LJBS17     
Function   processing and translocation of ComGC; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2777205..2787951
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  KXZ66_RS14455 (KXZ66_14450) mreC 2777611..2778483 (-) 873 WP_003222609.1 rod shape-determining protein MreC -
  KXZ66_RS14460 (KXZ66_14455) mreB 2778514..2779527 (-) 1014 WP_003229650.1 cell shape-determining protein MreB -
  KXZ66_RS14465 (KXZ66_14460) radC 2779619..2780314 (-) 696 WP_021480240.1 DNA repair protein RadC -
  KXZ66_RS14470 (KXZ66_14465) - 2780351..2780920 (-) 570 WP_004398496.1 Maf family nucleotide pyrophosphatase -
  KXZ66_RS14475 (KXZ66_14470) spoIIB 2781073..2782071 (-) 999 WP_021480241.1 stage II sporulation protein SpoIIB -
  KXZ66_RS14480 (KXZ66_14475) comC 2782205..2782951 (-) 747 WP_219144604.1 A24 family peptidase Machinery gene
  KXZ66_RS14485 (KXZ66_14480) - 2783091..2784383 (-) 1293 WP_219144605.1 folylpolyglutamate synthase/dihydrofolate synthase family protein -
  KXZ66_RS14490 (KXZ66_14485) valS 2784443..2787085 (-) 2643 WP_072175589.1 valine--tRNA ligase -
  KXZ66_RS14495 (KXZ66_14490) - 2787533..2787724 (+) 192 WP_003222590.1 hypothetical protein -

Sequence

Protein


Download         Length: 248 a.a.        Molecular weight: 26394.97 Da        Isoelectric Point: 9.7803

>NTDB_id=589337 KXZ66_RS14480 WP_219144604.1 2782205..2782951(-) (comC) [Bacillus sp. LJBS17]
MLSILFIFGLILGSFYYTAGCRIPLHLSIIAPRSSCPFCRRTLTPAELIPILSFLFQKGKCKSCGHKISFMYPTAELVTA
CLFAAAGIRFGASLELFPAVVFISLLIIVAVTDIHFMLIPNRILIFFLPFLAAARLISPLDSWYAGLLGAAAGFLFLAVI
AAITHGGVGGGDIKLFAVIGFVLGVKMLAAAFFFSVLIGALYGAAAVLTGRLAKRQPLPFAPAIAAGSILAYLYGDSIIS
FYIKMALG

Nucleotide


Download         Length: 747 bp        

>NTDB_id=589337 KXZ66_RS14480 WP_219144604.1 2782205..2782951(-) (comC) [Bacillus sp. LJBS17]
ATGCTATCCATTCTTTTTATCTTCGGGCTTATCCTTGGTTCTTTTTACTATACGGCCGGGTGCCGTATCCCCTTACATCT
ATCTATTATTGCGCCCCGTTCATCATGCCCGTTTTGCCGGCGAACATTAACTCCTGCAGAATTAATTCCCATCCTGTCAT
TCCTATTTCAAAAAGGTAAATGTAAAAGCTGCGGGCATAAGATTTCTTTTATGTATCCCACAGCAGAGCTTGTGACAGCG
TGTTTATTTGCTGCCGCAGGAATACGCTTTGGCGCATCGCTGGAACTGTTTCCCGCTGTGGTGTTTATCTCTCTTCTCAT
TATTGTTGCAGTGACAGATATTCATTTTATGCTGATTCCAAATCGAATATTGATTTTCTTTCTTCCCTTTTTGGCGGCCG
CGAGATTGATTTCTCCGCTTGATTCCTGGTATGCAGGCCTGTTAGGTGCGGCAGCCGGATTTCTGTTTCTGGCTGTAATT
GCCGCAATCACCCATGGGGGAGTAGGGGGAGGAGATATTAAATTATTTGCGGTGATTGGCTTTGTGCTTGGTGTGAAGAT
GCTGGCAGCTGCCTTTTTCTTTTCTGTTTTGATAGGTGCATTATATGGAGCGGCAGCTGTTCTGACTGGTAGACTCGCTA
AAAGGCAGCCGCTTCCCTTCGCCCCCGCTATAGCCGCAGGGAGCATTTTAGCCTATTTATACGGTGACTCTATCATTTCT
TTTTATATCAAAATGGCATTGGGCTGA

Domains

Predicted by InterproScan.

Bacterial Peptidase A24 N-terminal domain (A24_N_bact)

(7-90)

Type IV leader peptidase family (Peptidase_A24)

(101-203)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comC Bacillus subtilis subsp. subtilis str. 168

98.79

100

0.988