Detailed information    

insolico Bioinformatically predicted

Overview

Name   nucA/comI   Type   Machinery gene
Locus tag   KXZ66_RS13535 Genome accession   NZ_CP079759
Coordinates   2610613..2611023 (-) Length   136 a.a.
NCBI ID   WP_160221688.1    Uniprot ID   -
Organism   Bacillus sp. LJBS17     
Function   cleavage of dsDNA into ssDNA (predicted from homology)   
DNA processing

Genomic Context

Location: 2605613..2616023
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  KXZ66_RS13505 (KXZ66_13500) - 2605699..2605839 (+) 141 WP_003226124.1 sporulation histidine kinase inhibitor Sda -
  KXZ66_RS13510 (KXZ66_13505) - 2606145..2606876 (-) 732 WP_003229964.1 SGNH/GDSL hydrolase family protein -
  KXZ66_RS13515 (KXZ66_13510) cwlH 2607128..2607880 (-) 753 WP_163138266.1 N-acetylmuramoyl-L-alanine amidase CwlH -
  KXZ66_RS13520 (KXZ66_13515) - 2608067..2608693 (+) 627 WP_038429330.1 TVP38/TMEM64 family protein -
  KXZ66_RS13525 (KXZ66_13520) gnd 2608712..2609605 (-) 894 WP_163138265.1 phosphogluconate dehydrogenase (NAD(+)-dependent, decarboxylating) -
  KXZ66_RS13530 (KXZ66_13525) - 2609858..2610580 (+) 723 WP_219144591.1 DUF308 domain-containing protein -
  KXZ66_RS13535 (KXZ66_13530) nucA/comI 2610613..2611023 (-) 411 WP_160221688.1 sporulation-specific Dnase NucB Machinery gene
  KXZ66_RS13540 (KXZ66_13535) sigK 2611219..2611947 (+) 729 WP_013308023.1 RNA polymerase sporulation sigma factor SigK -
  KXZ66_RS13545 (KXZ66_13540) - 2611947..2612045 (+) 99 WP_031600702.1 hypothetical protein -
  KXZ66_RS22605 - 2612042..2612254 (-) 213 Protein_2639 recombinase family protein -
  KXZ66_RS13555 (KXZ66_13550) psiE 2612846..2613262 (-) 417 WP_003246154.1 phosphate-starvation-inducible protein PsiE -
  KXZ66_RS13560 (KXZ66_13555) yrkQ 2613308..2614606 (-) 1299 WP_049141120.1 two-component system sensor histidine kinase YrkQ -
  KXZ66_RS13565 (KXZ66_13560) yrkP 2614593..2615288 (-) 696 WP_021480140.1 two-component response regulator YrkP -

Sequence

Protein


Download         Length: 136 a.a.        Molecular weight: 14994.06 Da        Isoelectric Point: 5.1853

>NTDB_id=589333 KXZ66_RS13535 WP_160221688.1 2610613..2611023(-) (nucA/comI) [Bacillus sp. LJBS17]
MKKWMAGLFLAAAVLLCLMVPQQIQGASLYDKVLYFPLSRYPETGSHIRDAIAEGHPDICTIDRDGADKRREESLKGIPT
KPGYDRDEWPMAVCEEGGAGADVRYVTPSDNRGAGSWVGNQMSSYPDGTRVLFIVQ

Nucleotide


Download         Length: 411 bp        

>NTDB_id=589333 KXZ66_RS13535 WP_160221688.1 2610613..2611023(-) (nucA/comI) [Bacillus sp. LJBS17]
ATGAAAAAATGGATGGCAGGCCTGTTTCTTGCTGCAGCAGTTCTTCTTTGTTTAATGGTTCCGCAACAGATCCAAGGCGC
ATCTTTGTATGACAAAGTGTTATATTTTCCGCTGTCTCGTTATCCGGAAACCGGCAGTCATATTAGGGATGCGATTGCAG
AGGGACATCCAGATATTTGTACCATTGACAGAGATGGAGCAGACAAAAGGCGGGAGGAATCTTTAAAGGGAATCCCGACC
AAGCCGGGCTATGACCGGGATGAGTGGCCGATGGCGGTCTGCGAGGAAGGCGGCGCAGGGGCTGATGTCCGATATGTGAC
GCCTTCTGATAATCGCGGCGCCGGCTCGTGGGTAGGGAATCAAATGAGCAGCTATCCTGACGGCACCAGAGTGCTGTTTA
TTGTGCAGTAA

Domains

Predicted by InterproScan.

Deoxyribonuclease NucA/NucB (DNase_NucA_NucB)

(40-130)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  nucA/comI Bacillus subtilis subsp. subtilis str. 168

62.609

84.559

0.529