Detailed information    

insolico Bioinformatically predicted

Overview

Name   recO   Type   Machinery gene
Locus tag   KXZ66_RS13285 Genome accession   NZ_CP079759
Coordinates   2567171..2567938 (-) Length   255 a.a.
NCBI ID   WP_049141200.1    Uniprot ID   -
Organism   Bacillus sp. LJBS17     
Function   ssDNA annealing; plasmid transformation (predicted from homology)   
DNA processing Homologous recombination

Genomic Context

Location: 2562171..2572938
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  KXZ66_RS13265 (KXZ66_13260) - 2562346..2563158 (-) 813 WP_003230064.1 pyruvate, water dikinase regulatory protein -
  KXZ66_RS13270 (KXZ66_13265) ccpN 2563184..2563822 (-) 639 WP_003237058.1 transcriptional regulator CcpN -
  KXZ66_RS13275 (KXZ66_13270) glyS 2563955..2565994 (-) 2040 WP_128441734.1 glycine--tRNA ligase subunit beta -
  KXZ66_RS13280 (KXZ66_13275) glyQ 2565987..2566874 (-) 888 WP_003226213.1 glycine--tRNA ligase subunit alpha -
  KXZ66_RS13285 (KXZ66_13280) recO 2567171..2567938 (-) 768 WP_049141200.1 DNA repair protein RecO Machinery gene
  KXZ66_RS13290 (KXZ66_13285) - 2567975..2568118 (-) 144 WP_003230053.1 YqzL family protein -
  KXZ66_RS13295 (KXZ66_13290) era 2568266..2569171 (-) 906 WP_003230051.1 GTPase Era -
  KXZ66_RS13300 (KXZ66_13295) - 2569152..2569562 (-) 411 WP_003230049.1 cytidine deaminase -
  KXZ66_RS13305 (KXZ66_13300) - 2569681..2570052 (-) 372 WP_015384119.1 diacylglycerol kinase family protein -
  KXZ66_RS13310 (KXZ66_13305) ybeY 2570033..2570506 (-) 474 WP_003230039.1 rRNA maturation RNase YbeY -
  KXZ66_RS13315 (KXZ66_13310) pgpH 2570507..2572642 (-) 2136 WP_072175800.1 cyclic-di-AMP phosphodiesterase PgpH -

Sequence

Protein


Download         Length: 255 a.a.        Molecular weight: 29326.05 Da        Isoelectric Point: 8.3080

>NTDB_id=589329 KXZ66_RS13285 WP_049141200.1 2567171..2567938(-) (recO) [Bacillus sp. LJBS17]
MLTKCEGIVLRTNDYGETNKIVTLLTREHGKIGVMARGAKKPNSRLSAVSQPFLYGAFLMQKTSGLGTLQQGEMILSMRG
IREDLFLTAYAAYIAELVDRGTEEKKPNPYLFEFILESLKQLNEGTDPDVITFIVQMKMLGVMGLYPELNHCVHCKSQDG
TFHFSVRDNGFICHRCFEKDPYRIPIKPQTARLLRLFYYFDLSRLGNVSLKEETKAELKQVIDLYYEEYSGLYLKSKRFL
DQMESMKHLMGENKS

Nucleotide


Download         Length: 768 bp        

>NTDB_id=589329 KXZ66_RS13285 WP_049141200.1 2567171..2567938(-) (recO) [Bacillus sp. LJBS17]
ATGCTGACAAAATGTGAAGGAATCGTTCTTCGCACAAATGATTACGGAGAGACGAATAAAATCGTAACATTACTGACAAG
AGAACACGGAAAAATAGGTGTTATGGCACGAGGCGCCAAAAAACCGAACAGCCGTTTATCAGCAGTCAGCCAGCCCTTTT
TGTATGGTGCTTTCTTAATGCAAAAAACATCGGGCCTCGGAACGCTTCAGCAGGGGGAAATGATCCTCAGCATGAGAGGC
ATCAGGGAAGATTTGTTTTTAACAGCATATGCTGCCTATATTGCTGAGTTAGTCGACAGAGGCACAGAAGAAAAAAAGCC
AAATCCTTATTTATTTGAATTCATATTAGAATCATTAAAACAGCTGAATGAAGGAACAGATCCGGATGTTATCACCTTCA
TTGTTCAAATGAAGATGCTCGGTGTCATGGGCCTGTATCCTGAGCTAAATCATTGTGTTCATTGTAAAAGCCAAGACGGA
ACCTTTCATTTCTCTGTTCGTGATAATGGTTTTATATGCCACCGCTGTTTTGAAAAAGATCCTTACAGGATACCGATTAA
ACCGCAAACGGCAAGGCTGTTAAGACTCTTTTACTATTTTGATCTGTCGAGGCTCGGCAATGTGTCCTTAAAAGAGGAAA
CAAAAGCTGAATTAAAGCAAGTGATTGATTTATATTACGAAGAATATTCGGGATTGTATTTAAAATCAAAGCGCTTTTTA
GATCAAATGGAAAGCATGAAACATCTTATGGGTGAAAACAAAAGTTGA

Domains

Predicted by InterproScan.

Recombination protein O N terminal (RecO_N)

(1-75)

Recombination protein O C terminal (RecO_C)

(82-237)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recO Bacillus subtilis subsp. subtilis str. 168

99.216

100

0.992