Detailed information    

insolico Bioinformatically predicted

Overview

Name   recU   Type   Machinery gene
Locus tag   KXZ66_RS11775 Genome accession   NZ_CP079759
Coordinates   2301186..2301806 (+) Length   206 a.a.
NCBI ID   WP_219144557.1    Uniprot ID   -
Organism   Bacillus sp. LJBS17     
Function   plasmid transformation; homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2296186..2306806
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  KXZ66_RS11735 (KXZ66_11730) - 2297317..2297823 (-) 507 WP_120028600.1 PTS glucose transporter subunit IIA -
  KXZ66_RS11740 (KXZ66_11735) - 2297961..2298380 (+) 420 WP_219144556.1 Hsp20/alpha crystallin family protein -
  KXZ66_RS11745 (KXZ66_11740) - 2298401..2298778 (-) 378 WP_004398696.1 YppG family protein -
  KXZ66_RS11750 (KXZ66_11745) - 2298966..2299154 (+) 189 WP_003230690.1 YppF family protein -
  KXZ66_RS11755 (KXZ66_11750) - 2299193..2299564 (-) 372 WP_021481525.1 YppE family protein -
  KXZ66_RS11760 (KXZ66_11755) - 2299610..2299855 (-) 246 WP_021481526.1 DUF5446 family protein -
  KXZ66_RS11765 (KXZ66_11760) sspM 2300054..2300158 (+) 105 WP_003225606.1 acid-soluble spore protein SspM -
  KXZ66_RS11770 (KXZ66_11765) - 2300183..2301145 (-) 963 WP_021481527.1 DUF2515 domain-containing protein -
  KXZ66_RS11775 (KXZ66_11770) recU 2301186..2301806 (+) 621 WP_219144557.1 Holliday junction resolvase RecU Machinery gene
  KXZ66_RS11780 (KXZ66_11775) - 2301828..2304569 (+) 2742 WP_219144558.1 PBP1A family penicillin-binding protein -
  KXZ66_RS11785 (KXZ66_11780) - 2304645..2305139 (-) 495 WP_219144559.1 YpoC family protein -
  KXZ66_RS11790 (KXZ66_11785) nth 2305136..2305795 (-) 660 WP_077671383.1 endonuclease III -
  KXZ66_RS11795 (KXZ66_11790) dnaD 2305814..2306512 (-) 699 WP_004398499.1 DNA replication protein DnaD -

Sequence

Protein


Download         Length: 206 a.a.        Molecular weight: 23987.14 Da        Isoelectric Point: 9.7222

>NTDB_id=589317 KXZ66_RS11775 WP_219144557.1 2301186..2301806(+) (recU) [Bacillus sp. LJBS17]
MIRYPNGKTFQPKHSVSSQNSRKRAPSYSNRGMTLEDDLNETNKYYLTNQIAVIHKKPTPVQIVNVHYPKRSAAVIKEAY
FKQSSTTDYNGIYKGRYIDFEAKETKNKTSFPLQNFHDHQIEHMKQVKAQDGICFVIISAFDQVYFLEADKLFYFWDRKE
KNGRKSIRKDELEETAYPISLGYAPRIDYISIIEQLYFSPSSGAKG

Nucleotide


Download         Length: 621 bp        

>NTDB_id=589317 KXZ66_RS11775 WP_219144557.1 2301186..2301806(+) (recU) [Bacillus sp. LJBS17]
GTGATTCGGTATCCTAACGGAAAAACATTTCAGCCGAAACATTCGGTTTCATCCCAAAACAGTCGGAAAAGGGCCCCGTC
TTACAGTAATCGCGGAATGACCCTCGAAGATGACTTAAACGAAACGAATAAGTATTATCTGACAAACCAAATTGCCGTTA
TACACAAAAAGCCGACACCTGTTCAAATTGTAAATGTCCATTATCCAAAAAGAAGTGCCGCAGTGATTAAAGAAGCTTAC
TTTAAACAATCATCGACAACAGACTACAATGGGATTTACAAAGGGCGGTATATTGATTTTGAGGCGAAAGAAACGAAAAA
CAAGACCTCTTTCCCCCTGCAGAATTTTCATGACCATCAAATCGAGCATATGAAGCAGGTAAAGGCTCAAGACGGTATTT
GTTTTGTTATTATATCCGCTTTCGACCAGGTTTATTTTTTGGAAGCCGATAAGCTGTTTTATTTCTGGGACAGAAAAGAA
AAAAACGGCAGAAAATCAATTCGAAAAGATGAGTTGGAAGAAACAGCTTATCCGATTTCTCTTGGATACGCACCCAGAAT
TGATTATATTAGTATTATTGAACAGCTTTATTTTTCGCCATCATCTGGTGCGAAAGGTTGA

Domains

Predicted by InterproScan.

Recombination protein U (RecU)

(31-193)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recU Bacillus subtilis subsp. subtilis str. 168

99.515

100

0.995