Detailed information    

insolico Bioinformatically predicted

Overview

Name   comK   Type   Regulator
Locus tag   KXZ66_RS05620 Genome accession   NZ_CP079759
Coordinates   1097599..1098177 (+) Length   192 a.a.
NCBI ID   WP_003245329.1    Uniprot ID   A0A809FND1
Organism   Bacillus sp. LJBS17     
Function   activate transcription of late competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 1092599..1103177
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  KXZ66_RS22810 - 1093110..1093625 (-) 516 WP_326255844.1 methyl-accepting chemotaxis protein -
  KXZ66_RS22815 - 1093866..1094492 (-) 627 Protein_1045 protoglobin domain-containing protein -
  KXZ66_RS05605 (KXZ66_05605) - 1094547..1096076 (-) 1530 WP_049140685.1 FAD-dependent oxidoreductase -
  KXZ66_RS05610 (KXZ66_05610) - 1096188..1097045 (+) 858 WP_021479616.1 SDR family oxidoreductase -
  KXZ66_RS05615 (KXZ66_05615) - 1097073..1097306 (-) 234 WP_003233142.1 IDEAL domain-containing protein -
  KXZ66_RS05620 (KXZ66_05620) comK 1097599..1098177 (+) 579 WP_003245329.1 competence transcription factor ComK Regulator
  KXZ66_RS05625 (KXZ66_05625) - 1098222..1099121 (-) 900 WP_041851019.1 SDR family oxidoreductase -
  KXZ66_RS05630 (KXZ66_05630) - 1099338..1099607 (+) 270 WP_021479615.1 excalibur calcium-binding domain-containing protein -
  KXZ66_RS05635 (KXZ66_05635) - 1099650..1101119 (-) 1470 WP_032725349.1 sodium:solute symporter -
  KXZ66_RS05640 (KXZ66_05640) - 1101116..1101316 (-) 201 WP_003224377.1 DUF3311 domain-containing protein -
  KXZ66_RS05645 (KXZ66_05645) - 1101515..1101886 (-) 372 WP_014476361.1 hypothetical protein -
  KXZ66_RS05650 (KXZ66_05650) - 1102038..1102661 (+) 624 WP_010886465.1 TVP38/TMEM64 family protein -
  KXZ66_RS05655 (KXZ66_05655) lepB 1102663..1103169 (+) 507 WP_003233128.1 signal peptidase I -

Sequence

Protein


Download         Length: 192 a.a.        Molecular weight: 22429.68 Da        Isoelectric Point: 7.7153

>NTDB_id=589298 KXZ66_RS05620 WP_003245329.1 1097599..1098177(+) (comK) [Bacillus sp. LJBS17]
MSQKTDAPLESYEVNGATIAVLPEEIDGKICSKIIEKDCVFYVNMKPLQIVDRSCRFFGSSYAGRKAGTYEVTKISHKPP
IMVDPSNQIFLFPTLSSTRPQCGWISHVHVKEFKATEFDDTEVTFSNGKTMELPISYNSFENQVYRTAWLRTKFQDRIDH
RVPKRQEFMLYPKEERTKMIYDFILRELGERY

Nucleotide


Download         Length: 579 bp        

>NTDB_id=589298 KXZ66_RS05620 WP_003245329.1 1097599..1098177(+) (comK) [Bacillus sp. LJBS17]
ATGAGTCAGAAAACAGACGCACCTTTAGAATCGTATGAAGTGAACGGCGCAACAATTGCAGTGCTGCCAGAAGAAATAGA
CGGCAAAATCTGTTCCAAAATTATTGAAAAAGATTGCGTGTTTTATGTCAACATGAAGCCGCTGCAAATTGTCGACAGAA
GCTGCCGATTTTTTGGATCAAGCTATGCGGGAAGAAAAGCAGGAACTTATGAAGTGACAAAAATTTCACACAAGCCGCCG
ATCATGGTGGACCCTTCGAACCAAATCTTTTTATTCCCTACACTTTCTTCGACAAGACCCCAATGCGGCTGGATTTCCCA
TGTGCACGTAAAAGAATTCAAAGCGACTGAATTCGACGATACGGAAGTGACGTTTTCCAATGGGAAAACGATGGAGCTGC
CGATCTCTTATAATTCGTTCGAGAACCAGGTATACCGAACAGCGTGGCTCAGAACCAAATTCCAAGACAGAATCGACCAC
CGCGTGCCGAAAAGGCAGGAATTTATGCTGTACCCGAAGGAAGAGCGGACGAAGATGATTTATGATTTTATTTTGCGTGA
GCTCGGGGAGCGGTATTAG

Domains

Predicted by InterproScan.

ComK protein (ComK)

(10-158)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A809FND1

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comK Bacillus subtilis subsp. subtilis str. 168

100

100

1