Detailed information    

insolico Bioinformatically predicted

Overview

Name   nucA/comI   Type   Machinery gene
Locus tag   KXZ66_RS01925 Genome accession   NZ_CP079759
Coordinates   360684..361133 (-) Length   149 a.a.
NCBI ID   WP_124073423.1    Uniprot ID   -
Organism   Bacillus sp. LJBS17     
Function   cleavage of dsDNA into ssDNA (predicted from homology)   
DNA processing

Genomic Context

Location: 355684..366133
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  KXZ66_RS01885 (KXZ66_01885) - 356005..356202 (+) 198 WP_122060560.1 hypothetical protein -
  KXZ66_RS01890 (KXZ66_01890) - 356222..356677 (+) 456 WP_049140212.1 RDD family protein -
  KXZ66_RS01895 (KXZ66_01895) - 356758..357090 (+) 333 WP_032724908.1 YckD family protein -
  KXZ66_RS01900 (KXZ66_01900) - 357218..357640 (+) 423 WP_170939093.1 MarR family winged helix-turn-helix transcriptional regulator -
  KXZ66_RS01905 (KXZ66_01905) - 357628..357969 (+) 342 WP_032724911.1 DUF3147 family protein -
  KXZ66_RS01910 (KXZ66_01910) - 357988..358716 (+) 729 WP_021481826.1 AAA family ATPase -
  KXZ66_RS01915 (KXZ66_01915) bglC 358789..360222 (+) 1434 WP_038828490.1 6-phospho-beta-glucosidase -
  KXZ66_RS01920 (KXZ66_01920) nin/comJ 360259..360657 (-) 399 WP_015715226.1 DNA-entry nuclease inhibitor Regulator
  KXZ66_RS01925 (KXZ66_01925) nucA/comI 360684..361133 (-) 450 WP_124073423.1 DNA-entry nuclease Machinery gene
  KXZ66_RS01930 (KXZ66_01930) tlpC 361301..363022 (-) 1722 WP_103803501.1 methyl-accepting chemotaxis protein TlpC -
  KXZ66_RS01935 (KXZ66_01935) hxlB 363132..363689 (-) 558 WP_041850679.1 6-phospho-3-hexuloisomerase -
  KXZ66_RS01940 (KXZ66_01940) hxlA 363695..364327 (-) 633 WP_041850680.1 3-hexulose-6-phosphate synthase -
  KXZ66_RS01945 (KXZ66_01945) hxlR 364559..364921 (+) 363 WP_003246265.1 transcriptional activator HxlR -

Sequence

Protein


Download         Length: 149 a.a.        Molecular weight: 16454.42 Da        Isoelectric Point: 4.5282

>NTDB_id=589288 KXZ66_RS01925 WP_124073423.1 360684..361133(-) (nucA/comI) [Bacillus sp. LJBS17]
MNITTDIIKTILLVIVIIAAAAVGLIKGDFFSADQKTSQTKEYDETIAFPSDRYPETAKHIKDAINEGHSEVCTIDRDGA
EERREQSLKDVPSKKGYDRDEWPMAMCKEGGEGASVEYITPADNRGAGSWVGHQLTDYPDGTKVLFTIQ

Nucleotide


Download         Length: 450 bp        

>NTDB_id=589288 KXZ66_RS01925 WP_124073423.1 360684..361133(-) (nucA/comI) [Bacillus sp. LJBS17]
GTGAACATCACGACGGACATCATAAAAACAATACTTCTCGTCATCGTCATCATAGCAGCTGCAGCTGTCGGCCTGATAAA
AGGAGACTTTTTCTCAGCTGATCAAAAAACGTCTCAAACGAAAGAATATGATGAAACAATCGCCTTCCCTTCTGACCGTT
ATCCCGAAACGGCCAAGCATATTAAGGATGCGATAAATGAGGGGCACTCAGAGGTGTGCACTATCGACAGAGACGGAGCT
GAGGAACGCCGCGAGCAATCATTAAAGGACGTACCTTCCAAAAAGGGGTATGACAGAGATGAATGGCCAATGGCCATGTG
CAAAGAAGGCGGTGAGGGAGCTTCTGTAGAATACATTACTCCCGCTGACAACCGCGGAGCAGGCTCTTGGGTCGGGCATC
AGCTTACCGATTACCCAGACGGCACAAAGGTTTTATTCACAATTCAGTAA

Domains

Predicted by InterproScan.

Deoxyribonuclease NucA/NucB (DNase_NucA_NucB)

(52-148)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  nucA/comI Bacillus subtilis subsp. subtilis str. 168

97.987

100

0.98