Detailed information NTG0058922

Bioinformatically predicted

Overview

• Name: cytR
• Type: Regulator
• Locus tag: V060002_RS09000
• Genome accession: NZ_AP018677
• Coordinates: 1767419..1768423 (-)
• Length: 334 a.a.
• NCBI ID: WP_000224436.1
• Uniprot ID: Q9KN33
• Organism: Vibrio cholerae strain V060002
• Function: promote competence gene expression (predicted from homology) Competence regulation

Genomic Context

Location: 1762419..1773423

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
V060002_RS08980 (V060002_01676)	glpQ	1763891..1764958 (+)	1068	WP_000917235.1	glycerophosphodiester phosphodiesterase	-
V060002_RS08985 (V060002_01677)	-	1765011..1765691 (-)	681	WP_001177523.1	Crp/Fnr family transcriptional regulator	-
V060002_RS08990 (V060002_01678)	-	1765831..1766562 (-)	732	WP_000027380.1	nucleoside phosphorylase	-
V060002_RS08995 (V060002_01679)	pnuC	1766559..1767293 (-)	735	Protein_1644	nicotinamide riboside transporter PnuC	-
V060002_RS09000 (V060002_01680)	cytR	1767419..1768423 (-)	1005	WP_000224436.1	substrate-binding domain-containing protein	Regulator
V060002_RS09005 (V060002_01681)	rbsK	1768434..1769354 (-)	921	WP_001038380.1	ribokinase	-
V060002_RS09010 (V060002_01682)	rbsB	1769493..1770371 (-)	879	WP_000737186.1	ribose ABC transporter substrate-binding protein RbsB	-
V060002_RS09015 (V060002_01683)	rbsC	1770432..1771415 (-)	984	WP_000107609.1	ribose ABC transporter permease	-
V060002_RS09020 (V060002_01684)	rbsA	1771430..1772932 (-)	1503	WP_000189455.1	ribose ABC transporter ATP-binding protein RbsA	-
V060002_RS09025 (V060002_01685)	rbsD	1772959..1773378 (-)	420	WP_001911632.1	D-ribose pyranase	-

Sequence

Protein

• Length: 334 a.a.
• Molecular weight: 37090.71 Da
• Isoelectric Point: 7.6774

>NTDB_id=58922 V060002_RS09000 WP_000224436.1 1767419..1768423(-) (cytR) [Vibrio cholerae strain V060002]
MATMKDIARLAGVSTSTVSHVINKSRFVSDEIAERVNNAAQQLNYAPSALARSLKMNRTKTIGMLVTTSTNPFFGEVVKG
VERSCYHQGYNLILCNTEGDNQRMKASINTLLQKRVDGLLLMCSTLEGERLDVFDRYPDIPIVVMDWGPILFASDKIQDN
SLQGGYMAAKHLIECGHKEIGCITGPLIRHQAQMRYEGYKRALAEAGIAINPDWIVESDFECEGGYQAFEKLYQRGKLPS
ALFVSNDMMAMGVIQAASQRGLRVPDDLSLIGYDDVHIAKFMTPALTTIHQPKYRLGKAAVDTLLYRLENPDTTAQVVQL
EPTLVVRNSVRKLG

Nucleotide

• Length: 1005 bp

>NTDB_id=58922 V060002_RS09000 WP_000224436.1 1767419..1768423(-) (cytR) [Vibrio cholerae strain V060002]
ATGGCCACCATGAAGGATATCGCTCGACTTGCTGGCGTCTCCACTTCAACCGTAAGCCATGTGATCAATAAGAGTCGTTT
TGTGAGTGATGAAATTGCTGAGCGGGTGAATAACGCCGCTCAGCAACTCAATTACGCCCCCTCCGCTCTCGCGCGTAGCC
TCAAAATGAACCGCACCAAAACCATTGGCATGTTAGTGACCACCTCGACCAACCCATTTTTTGGTGAAGTGGTAAAAGGC
GTAGAGCGAAGCTGTTATCACCAAGGCTACAACCTAATCTTGTGCAATACCGAAGGGGATAACCAACGCATGAAAGCCAG
CATCAACACCTTGCTGCAAAAGCGTGTCGATGGTTTGCTGCTGATGTGCTCAACCCTTGAGGGTGAAAGGTTGGATGTGT
TTGACCGCTATCCCGACATTCCTATTGTGGTCATGGACTGGGGCCCGATCCTTTTTGCGAGTGACAAAATTCAAGACAAC
TCACTGCAAGGTGGCTACATGGCGGCCAAGCATCTGATTGAGTGTGGGCATAAAGAGATTGGTTGTATCACAGGTCCGCT
GATTCGCCACCAAGCACAGATGCGTTATGAAGGTTACAAACGTGCGCTCGCGGAAGCGGGAATTGCCATTAATCCAGATT
GGATTGTGGAATCTGACTTCGAGTGTGAAGGTGGTTACCAAGCCTTTGAAAAACTCTATCAGCGTGGCAAATTGCCCAGT
GCTTTGTTTGTTTCCAATGACATGATGGCGATGGGCGTGATTCAAGCCGCTAGCCAACGAGGTTTGCGAGTGCCGGACGA
TCTTTCCTTGATTGGCTACGATGATGTGCATATCGCTAAGTTTATGACCCCGGCGTTAACCACCATCCATCAACCCAAAT
ACCGCCTCGGCAAAGCCGCTGTGGATACCCTGCTTTATCGGTTGGAAAATCCAGACACTACCGCGCAAGTGGTACAGTTA
GAGCCGACTTTAGTGGTGCGTAATAGTGTACGAAAACTCGGCTAG

Domains

Predicted by InterProScan.

• Bacterial regulatory proteins, lacI family (LacI) (3-48)

• Periplasmic binding protein-like domain (Peripla_BP_3) (170-330)

3D structure

• AlphaFold DB: Q9KN33

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
cytR	Vibrio cholerae C6706	38.554	99.401	0.383
cytR	Vibrio parahaemolyticus RIMD 2210633	37.952	99.401	0.377