Detailed information    

insolico Bioinformatically predicted

Overview

Name   ceuB   Type   Machinery gene
Locus tag   V060002_RS08560 Genome accession   NZ_AP018677
Coordinates   1664350..1665288 (-) Length   312 a.a.
NCBI ID   WP_000735136.1    Uniprot ID   Q9KMU1
Organism   Vibrio cholerae strain V060002     
Function   DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1659350..1670288
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  V060002_RS08540 (V060002_01593) vctA 1659515..1661494 (-) 1980 WP_000350325.1 TonB-dependent iron chelate receptor VctA -
  V060002_RS08545 (V060002_01594) - 1661581..1662597 (+) 1017 WP_001181423.1 helix-turn-helix domain-containing protein -
  V060002_RS08550 (V060002_01595) vctC 1662643..1663407 (-) 765 WP_000615308.1 iron chelate ABC transporter ATP-binding protein VctC -
  V060002_RS08555 (V060002_01596) vctG 1663410..1664360 (-) 951 WP_001154099.1 iron chelate uptake ABC transporter permease subunit VctG -
  V060002_RS08560 (V060002_01597) ceuB 1664350..1665288 (-) 939 WP_000735136.1 iron chelate uptake ABC transporter permease subunit VctD Machinery gene
  V060002_RS08565 (V060002_01598) vctP 1665341..1666252 (-) 912 WP_000842240.1 iron chelate ABC transporter substrate-binding protein VctP -
  V060002_RS08570 (V060002_01599) - 1666658..1667416 (-) 759 WP_000336883.1 class II glutamine amidotransferase -
  V060002_RS08575 (V060002_01600) - 1668009..1668281 (+) 273 WP_001259471.1 hypothetical protein -

Sequence

Protein


Download         Length: 312 a.a.        Molecular weight: 33812.57 Da        Isoelectric Point: 9.4866

>NTDB_id=58920 V060002_RS08560 WP_000735136.1 1664350..1665288(-) (ceuB) [Vibrio cholerae strain V060002]
MKKLLLVLVVISFCSLFVGVGNLSLAALFQGDESAWQLLLTSRVPRLLAILLSGAGLSIAGLIMQQVSQNRFASPSTSGT
IECAMLGYVLSLVLFGHGQNLWLIFGVSMLGTLVFVFFIQRIQFKNVIFVPLIGIIFGNVIDSLATFIAYKYDAIQNLSG
WAVANFANLLKGDFELLYIAIPVAIFSYLYAARISAVGMGKDFATNLGLNYQQVMIIGVALVSIMSATVVMIVGQLPFLG
LIVPNLVSLYYGDNLRKNIPRTAIFGAMFVLLCDLVGRVIIFPYEVPISMIISILGGSVFIALILRGQRHAG

Nucleotide


Download         Length: 939 bp        

>NTDB_id=58920 V060002_RS08560 WP_000735136.1 1664350..1665288(-) (ceuB) [Vibrio cholerae strain V060002]
TTGAAAAAGTTATTGCTTGTTTTAGTTGTTATTAGTTTTTGTTCCCTGTTTGTTGGCGTGGGCAATTTATCCCTCGCAGC
CTTGTTTCAAGGTGATGAGTCAGCTTGGCAGTTACTGCTGACTAGCCGAGTCCCCCGATTATTAGCGATTTTGCTCTCCG
GTGCGGGTTTAAGCATCGCGGGTCTTATCATGCAGCAAGTGAGTCAAAACCGATTTGCCTCACCATCGACTTCCGGCACG
ATTGAGTGTGCCATGCTCGGTTACGTGCTTAGCCTAGTTCTGTTTGGCCATGGTCAAAACCTCTGGTTGATTTTCGGCGT
CTCCATGTTGGGTACGCTGGTCTTTGTGTTTTTCATTCAGCGCATTCAGTTTAAAAACGTCATTTTCGTGCCGCTGATCG
GCATCATTTTTGGCAATGTGATTGACTCTTTGGCGACCTTTATTGCCTACAAATATGATGCTATCCAAAATCTTTCCGGT
TGGGCTGTTGCCAATTTTGCCAACCTGCTTAAAGGGGATTTTGAACTGCTCTATATCGCAATCCCAGTGGCTATTTTCAG
CTATTTGTACGCCGCACGCATTTCTGCCGTGGGGATGGGAAAAGATTTTGCGACCAATCTGGGTTTGAATTATCAACAGG
TCATGATCATCGGTGTGGCCTTAGTCTCCATCATGTCGGCGACCGTGGTCATGATTGTCGGTCAACTGCCTTTCTTGGGT
TTGATTGTGCCTAATCTAGTCAGCCTCTATTACGGCGATAATTTGCGTAAAAATATTCCGCGCACTGCCATTTTCGGGGC
GATGTTCGTGTTGTTATGTGATTTAGTGGGGCGCGTCATCATCTTCCCGTATGAAGTCCCCATCTCTATGATCATCAGTA
TTTTAGGTGGTTCGGTGTTTATTGCCTTGATTTTGCGAGGGCAGCGTCATGCAGGATAG

Domains

Predicted by InterProScan.

FecCD transport family (FecCD)

(8-306)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB Q9KMU1

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ceuB Campylobacter jejuni subsp. jejuni 81-176

43.81

100

0.442

Multiple sequence alignment