Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilX   Type   Machinery gene
Locus tag   KYX50_RS01610 Genome accession   NZ_CP079743
Coordinates   341375..342193 (+) Length   272 a.a.
NCBI ID   WP_000149374.1    Uniprot ID   N9LAR9
Organism   Acinetobacter baumannii strain 04117201     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 336375..347193
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  KYX50_RS01575 (KYX50_01585) - 336957..337087 (-) 131 Protein_300 hypothetical protein -
  KYX50_RS01580 (KYX50_01590) rpoZ 337126..337404 (-) 279 WP_000135049.1 DNA-directed RNA polymerase subunit omega -
  KYX50_RS01585 (KYX50_01595) gmk 337477..338106 (-) 630 WP_000015937.1 guanylate kinase -
  KYX50_RS01590 (KYX50_01600) ispH 338229..339179 (+) 951 WP_000407064.1 4-hydroxy-3-methylbut-2-enyl diphosphate reductase -
  KYX50_RS01595 (KYX50_01605) fimU 339349..339822 (+) 474 WP_001214061.1 GspH/FimT family pseudopilin Machinery gene
  KYX50_RS01600 (KYX50_01610) pilV 339816..340376 (+) 561 WP_085916952.1 type IV pilus modification protein PilV Machinery gene
  KYX50_RS01605 (KYX50_01615) pilW 340377..341378 (+) 1002 WP_000079200.1 PilW family protein Machinery gene
  KYX50_RS01610 (KYX50_01620) pilX 341375..342193 (+) 819 WP_000149374.1 PilX N-terminal domain-containing pilus assembly protein Machinery gene
  KYX50_RS01615 (KYX50_01625) - 342205..346058 (+) 3854 Protein_308 PilC/PilY family type IV pilus protein -
  KYX50_RS01620 (KYX50_01630) pilY2 346071..346553 (+) 483 WP_001046420.1 type IV pilin protein Machinery gene
  KYX50_RS01625 (KYX50_01635) pilE 346550..346975 (+) 426 WP_000788342.1 type IV pilin protein Machinery gene

Sequence

Protein


Download         Length: 272 a.a.        Molecular weight: 28832.66 Da        Isoelectric Point: 5.6905

>NTDB_id=589135 KYX50_RS01610 WP_000149374.1 341375..342193(+) (pilX) [Acinetobacter baumannii strain 04117201]
MTHLNYKNIKGRSKETGATLIVVLIILLIVISVGVLAIRVAIVSLKVATNSQVGQLNFQSSDTPLELIVQMNPTTLTNIT
NVIGAALKAHESNPGAEYNFCYKPTSTSVSFAQTRGASLLRAGSANNAVVEDGGVAGFCDLTSDYGSNRQAVVTQVAVSI
PTDAMADIPGSNLPRDINLSEGTQLPKSMLSTQRIRVITTAFLPAYASTSLETLQSDCLSTSSAKISDNFDSALTDKQTL
ADCLANHNVPFSTQVQEFNYTNKLTEITAPGS

Nucleotide


Download         Length: 819 bp        

>NTDB_id=589135 KYX50_RS01610 WP_000149374.1 341375..342193(+) (pilX) [Acinetobacter baumannii strain 04117201]
ATGACCCATTTAAATTATAAAAATATTAAAGGTCGATCTAAGGAAACGGGTGCCACACTTATTGTTGTACTTATTATTTT
ATTGATTGTTATTTCTGTCGGGGTTTTGGCAATAAGAGTAGCGATTGTTTCTCTAAAAGTTGCAACTAATAGCCAAGTTG
GCCAATTAAACTTTCAATCTTCAGATACTCCGTTAGAGCTTATTGTACAGATGAACCCAACCACATTGACAAATATTACC
AATGTGATTGGAGCAGCACTGAAAGCACATGAAAGTAACCCTGGTGCGGAATATAACTTTTGCTATAAACCAACTTCTAC
ATCTGTAAGTTTTGCTCAAACTCGGGGGGCAAGTTTGCTTCGAGCTGGCAGCGCTAATAATGCTGTGGTTGAAGATGGTG
GAGTAGCAGGTTTCTGCGATTTAACAAGTGACTATGGGAGTAATCGTCAAGCGGTAGTTACTCAAGTTGCTGTCAGTATC
CCAACCGATGCCATGGCTGATATTCCGGGTTCAAATCTACCTCGGGACATAAATCTTTCCGAAGGAACCCAACTTCCTAA
AAGCATGCTATCTACGCAACGTATCCGGGTTATTACAACAGCGTTTTTACCTGCTTATGCCTCAACTTCTTTAGAAACTC
TGCAATCTGATTGCTTAAGTACGAGTTCCGCAAAAATTAGTGACAACTTTGATAGTGCATTAACGGATAAGCAAACTCTA
GCTGATTGTTTGGCAAACCATAATGTACCTTTTAGTACTCAAGTTCAAGAATTTAACTATACCAATAAGCTGACTGAAAT
CACGGCACCAGGTTCATAA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB N9LAR9

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilX Acinetobacter baumannii D1279779

99.265

100

0.993