Detailed information    

insolico Bioinformatically predicted

Overview

Name   ruvA   Type   Machinery gene
Locus tag   V060002_RS05515 Genome accession   NZ_AP018677
Coordinates   1148206..1148820 (+) Length   204 a.a.
NCBI ID   WP_000580359.1    Uniprot ID   Q9KR01
Organism   Vibrio cholerae strain V060002     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1143206..1153820
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  V060002_RS05490 (V060002_01068) - 1143390..1144604 (-) 1215 WP_001881603.1 EAL and HDOD domain-containing protein -
  V060002_RS05495 (V060002_01069) lpxH 1144700..1145440 (-) 741 WP_000557000.1 UDP-2,3-diacylglucosamine diphosphatase -
  V060002_RS05500 (V060002_01070) - 1145481..1145975 (-) 495 WP_000631302.1 peptidylprolyl isomerase -
  V060002_RS05505 (V060002_01071) cysS 1146121..1147500 (+) 1380 WP_000913180.1 cysteine--tRNA ligase -
  V060002_RS05510 (V060002_01072) ruvC 1147588..1148109 (+) 522 WP_000111361.1 crossover junction endodeoxyribonuclease RuvC -
  V060002_RS05515 (V060002_01073) ruvA 1148206..1148820 (+) 615 WP_000580359.1 Holliday junction branch migration protein RuvA Machinery gene
  V060002_RS05520 (V060002_01074) ruvB 1148876..1149880 (+) 1005 WP_000568491.1 Holliday junction branch migration DNA helicase RuvB Machinery gene
  V060002_RS05525 (V060002_01076) cydA 1150339..1151925 (+) 1587 WP_000568056.1 cytochrome ubiquinol oxidase subunit I -
  V060002_RS05530 (V060002_01077) cydB 1151943..1153079 (+) 1137 WP_000460767.1 cytochrome d ubiquinol oxidase subunit II -
  V060002_RS05535 (V060002_01078) cydX 1153092..1153199 (+) 108 WP_000270285.1 cytochrome bd-I oxidase subunit CydX -
  V060002_RS05540 ybgE 1153192..1153509 (+) 318 WP_001286617.1 cyd operon protein YbgE -

Sequence

Protein


Download         Length: 204 a.a.        Molecular weight: 22008.70 Da        Isoelectric Point: 5.0954

>NTDB_id=58906 V060002_RS05515 WP_000580359.1 1148206..1148820(+) (ruvA) [Vibrio cholerae strain V060002]
MIGRLRGTLIEKLPPQILIEVGGIGYEVQMPMSCIYELPNIGEEAIIYTHFVVREDAQLLYGFNTVSERALFREVIKANG
VGPKMGLAILSGMTANQFVTCVEKEDISTLIKLPGVGKKTAERLVVEMKDRLKGWGAGDLFTPATDAAPVDSTPVIAQNA
QEEAMSALLALGYKPPQASKAVSQVAKAGMSSEELIREALKSMV

Nucleotide


Download         Length: 615 bp        

>NTDB_id=58906 V060002_RS05515 WP_000580359.1 1148206..1148820(+) (ruvA) [Vibrio cholerae strain V060002]
GTGATTGGACGTCTTCGCGGTACGCTGATTGAAAAGTTACCTCCTCAAATTTTGATTGAGGTCGGTGGTATTGGCTATGA
AGTGCAAATGCCGATGAGCTGTATTTATGAACTGCCGAATATTGGGGAAGAAGCCATCATTTATACCCACTTTGTAGTTC
GAGAAGATGCACAGCTACTTTATGGCTTTAATACCGTTAGCGAACGCGCTCTGTTTCGTGAAGTAATCAAAGCCAATGGC
GTAGGGCCGAAAATGGGGCTTGCGATCCTCTCTGGCATGACAGCCAATCAGTTTGTGACTTGTGTGGAAAAAGAAGATAT
CTCTACCCTCATTAAATTACCGGGAGTCGGGAAGAAGACGGCTGAGCGATTGGTGGTGGAAATGAAAGATCGCCTGAAAG
GATGGGGAGCGGGTGACCTCTTTACACCTGCAACCGATGCGGCCCCTGTCGATTCTACGCCCGTGATTGCTCAAAATGCT
CAGGAAGAAGCCATGAGCGCGCTATTGGCGCTAGGTTACAAGCCCCCTCAAGCTTCCAAAGCGGTATCGCAAGTGGCTAA
AGCAGGAATGAGCAGTGAAGAGTTGATTCGTGAAGCGCTCAAATCTATGGTGTAA

Domains

Predicted by InterProScan.

RuvA, C-terminal domain (RuvA_C)

(159-203)

RuvA N terminal domain (RuvA_N)

(1-62)

Helix-hairpin-helix domain (HHH_5)

(72-130)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB Q9KR01

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ruvA Streptococcus pneumoniae TIGR4

36.098

100

0.363

Multiple sequence alignment