Detailed information    

insolico Bioinformatically predicted

Overview

Name   HI0659   Type   Machinery gene
Locus tag   KX728_RS07180 Genome accession   NZ_CP079724
Coordinates   1458858..1459151 (-) Length   97 a.a.
NCBI ID   WP_044021206.1    Uniprot ID   -
Organism   Streptococcus oralis strain 34     
Function   DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1453858..1464151
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  KX728_RS07170 (KX728_07165) metF 1455296..1456162 (-) 867 WP_044021764.1 methylenetetrahydrofolate reductase [NAD(P)H] -
  KX728_RS07175 (KX728_07170) metE 1456257..1458506 (-) 2250 WP_044021205.1 5-methyltetrahydropteroyltriglutamate-- homocysteine S-methyltransferase -
  KX728_RS07180 (KX728_07175) HI0659 1458858..1459151 (-) 294 WP_044021206.1 helix-turn-helix domain-containing protein Machinery gene
  KX728_RS07185 (KX728_07180) - 1459338..1459703 (-) 366 WP_044021208.1 TIGR02328 family protein -
  KX728_RS07190 (KX728_07185) - 1459687..1460091 (-) 405 WP_044021210.1 YbgA family protein -
  KX728_RS07195 (KX728_07190) - 1460184..1461785 (-) 1602 WP_044021212.1 type I restriction-modification system subunit M -
  KX728_RS07200 (KX728_07195) - 1461831..1462586 (-) 756 WP_215804405.1 hypothetical protein -
  KX728_RS07205 (KX728_07200) - 1462628..1463455 (-) 828 WP_044021216.1 hypothetical protein -
  KX728_RS07210 (KX728_07205) - 1463457..1463996 (-) 540 WP_044021218.1 hypothetical protein -

Sequence

Protein


Download         Length: 97 a.a.        Molecular weight: 10809.46 Da        Isoelectric Point: 5.1991

>NTDB_id=588989 KX728_RS07180 WP_044021206.1 1458858..1459151(-) (HI0659) [Streptococcus oralis strain 34]
MKNSTIGSNWKDVRTELFTKEEILESDMRVAIMSELIEARHEQGISQKKLEELSGVSQPVIARMETGKTSPQLDTVLKVL
ASLGKTLAVVPLEQEKN

Nucleotide


Download         Length: 294 bp        

>NTDB_id=588989 KX728_RS07180 WP_044021206.1 1458858..1459151(-) (HI0659) [Streptococcus oralis strain 34]
ATGAAGAATAGTACCATTGGAAGTAATTGGAAGGATGTCCGAACAGAACTCTTTACCAAGGAAGAAATTCTTGAAAGTGA
TATGCGAGTGGCTATTATGAGTGAGTTGATTGAGGCTAGACATGAGCAAGGTATCAGTCAGAAAAAGCTAGAGGAACTCA
GTGGAGTAAGCCAGCCTGTCATAGCTAGGATGGAAACAGGAAAGACTAGTCCTCAGTTGGATACGGTCTTAAAAGTCTTA
GCCAGTTTAGGAAAGACACTAGCAGTCGTCCCACTTGAACAGGAAAAAAATTGA

Domains

Predicted by InterproScan.

Helix-turn-helix (HTH_3)

(37-88)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  HI0659 Haemophilus influenzae Rd KW20

59.341

93.814

0.557