Detailed information    

insolico Bioinformatically predicted

Overview

Name   rapF   Type   Regulator
Locus tag   KXY09_RS18465 Genome accession   NZ_CP079719
Coordinates   3732228..3733373 (+) Length   381 a.a.
NCBI ID   WP_007407638.1    Uniprot ID   -
Organism   Bacillus velezensis strain LABIM44     
Function   inhibit the DNA-binding function of ComA (predicted from homology)   
Competence regulation

Genomic Context

Location: 3727228..3738373
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  KXY09_RS18445 (KXY09_18435) - 3728126..3728554 (-) 429 WP_007407634.1 DUF1934 domain-containing protein -
  KXY09_RS20310 - 3728708..3729219 (+) 512 Protein_3611 bacteriocin biosynthesis protein AlbG -
  KXY09_RS18455 (KXY09_18445) - 3729226..3730602 (-) 1377 WP_168984762.1 YncE family protein -
  KXY09_RS18460 (KXY09_18450) - 3730642..3731997 (-) 1356 WP_168984761.1 YncE family protein -
  KXY09_RS18465 (KXY09_18455) rapF 3732228..3733373 (+) 1146 WP_007407638.1 tetratricopeptide repeat protein Regulator
  KXY09_RS18470 (KXY09_18460) phrF 3733357..3733476 (+) 120 WP_007407639.1 PhrC/PhrF family phosphatase-inhibitory pheromone Regulator
  KXY09_RS18475 (KXY09_18465) - 3733674..3733877 (+) 204 WP_007407640.1 helix-turn-helix transcriptional regulator -
  KXY09_RS18480 (KXY09_18470) - 3733891..3734094 (+) 204 WP_007407641.1 hypothetical protein -
  KXY09_RS18485 (KXY09_18475) - 3734129..3734314 (+) 186 WP_007407642.1 DUF4177 domain-containing protein -
  KXY09_RS18490 (KXY09_18480) - 3734500..3734781 (+) 282 WP_007407643.1 hypothetical protein -
  KXY09_RS18495 (KXY09_18485) - 3734825..3735337 (+) 513 WP_023357177.1 stage II sporulation protein M -
  KXY09_RS18500 (KXY09_18490) - 3735928..3736146 (-) 219 WP_003151056.1 LuxR C-terminal-related transcriptional regulator -
  KXY09_RS18505 (KXY09_18495) speB 3736314..3737186 (-) 873 WP_168984760.1 agmatinase -
  KXY09_RS18510 (KXY09_18500) speE 3737245..3738075 (-) 831 WP_003151052.1 spermidine synthase -

Sequence

Protein


Download         Length: 381 a.a.        Molecular weight: 45543.57 Da        Isoelectric Point: 4.5769

>NTDB_id=588940 KXY09_RS18465 WP_007407638.1 3732228..3733373(+) (rapF) [Bacillus velezensis strain LABIM44]
MASVLSSSAVGEKINEWYMYIRRFSIPDAEYLRREIKEELAGLEDDQDLHLYYSLMEFRHNLMLEYLEPLESQRIEEQPR
LSDLLADIDKKQARLTGRLDYYFNFFRGMYELECREYLSAIQFFKKAEYKLDFVKDCIEKAEFYFKMSESYYYMKQTYFS
MDYARQAYKIYHKQEAYNIRVLQCHSLFATNFLDLKQYDEAIQHFKKAYAMAEAEQQPQLMGRTLYNIGLCFNSQENYKP
AIDYIKRAIAVFEDGNIITSLPQAYFLITQIHYKIGNMAIARQYHDKGVSYAEEAEDSLYIAEYEFLESLYVGEPDEEAI
MECFDFLRDKSMYADLEDFALDVAKYYHERENFEKASAYFLKVEETRQQIQGGVKLYEIEV

Nucleotide


Download         Length: 1146 bp        

>NTDB_id=588940 KXY09_RS18465 WP_007407638.1 3732228..3733373(+) (rapF) [Bacillus velezensis strain LABIM44]
GTGGCGAGTGTTTTATCATCTTCAGCGGTTGGAGAAAAAATCAACGAATGGTATATGTACATTCGAAGGTTCAGCATCCC
GGACGCCGAGTACTTGCGGAGAGAAATCAAAGAAGAACTTGCAGGTCTGGAAGATGATCAGGATCTTCATCTATACTATT
CTCTCATGGAATTCCGCCACAATCTGATGCTCGAATACCTCGAACCGCTGGAATCGCAGCGGATAGAAGAACAGCCTAGA
CTATCGGATCTGCTCGCGGATATTGATAAAAAGCAGGCCCGGCTGACCGGACGTCTTGATTATTATTTTAATTTTTTCCG
GGGGATGTATGAGCTGGAATGCCGTGAATATCTTTCAGCGATTCAGTTTTTTAAGAAAGCTGAATATAAGCTTGATTTTG
TCAAAGATTGTATCGAGAAAGCTGAATTTTATTTTAAGATGTCAGAGTCCTACTATTATATGAAACAGACTTATTTTTCT
ATGGATTATGCCCGGCAGGCTTATAAAATTTATCATAAGCAGGAGGCATATAATATAAGGGTGCTTCAGTGCCATTCATT
GTTCGCTACCAACTTTCTTGACTTAAAGCAATATGATGAAGCAATTCAGCATTTTAAAAAGGCTTATGCCATGGCAGAGG
CAGAACAGCAGCCACAATTAATGGGCCGGACTCTATATAATATCGGACTTTGTTTTAACAGCCAAGAAAATTACAAACCA
GCCATTGATTACATAAAACGGGCAATAGCTGTTTTTGAAGATGGGAACATTATCACTTCTCTCCCGCAAGCCTATTTCTT
AATCACACAAATACATTATAAAATCGGAAATATGGCCATAGCCAGACAATATCATGACAAAGGGGTATCTTATGCAGAGG
AGGCAGAAGATTCCCTATATATCGCCGAGTATGAATTTTTAGAATCTTTATATGTCGGTGAGCCTGATGAAGAAGCAATC
ATGGAATGTTTTGACTTTCTCAGAGATAAATCGATGTATGCTGATCTTGAAGATTTTGCCTTAGATGTGGCAAAATATTA
TCATGAAAGAGAAAATTTCGAGAAGGCTTCCGCATATTTTTTAAAGGTGGAAGAAACAAGACAGCAGATTCAAGGAGGTG
TGAAGTTGTATGAAATTGAAGTATAA

Domains

Predicted by InterproScan.

Tetratricopeptide repeat (TPR_12)

(189-253)

response regulator aspartate phosphatase H, N terminal (RapH_N)

(5-65)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rapF Bacillus subtilis subsp. subtilis str. 168

78.478

100

0.785
  rapC Bacillus subtilis subsp. subtilis str. 168

56.579

99.738

0.564