Detailed information    

insolico Bioinformatically predicted

Overview

Name   spo0A   Type   Regulator
Locus tag   KXY09_RS12400 Genome accession   NZ_CP079719
Coordinates   2567468..2568268 (-) Length   266 a.a.
NCBI ID   WP_003153177.1    Uniprot ID   I2C7K5
Organism   Bacillus velezensis strain LABIM44     
Function   activation and repression of comK; repression of rok; repression of abrB (predicted from homology)   
Competence regulation

Genomic Context

Location: 2562468..2573268
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  KXY09_RS12370 (KXY09_12365) - 2563005..2563637 (+) 633 WP_007408365.1 helix-turn-helix domain-containing protein -
  KXY09_RS12375 (KXY09_12370) - 2563934..2564071 (+) 138 WP_014470646.1 hypothetical protein -
  KXY09_RS12380 (KXY09_12375) - 2564165..2565283 (+) 1119 WP_015240192.1 NADH-dependent flavin oxidoreductase -
  KXY09_RS12385 (KXY09_12380) - 2565411..2565623 (+) 213 WP_007408362.1 spore germination protein -
  KXY09_RS12390 (KXY09_12385) - 2565749..2565961 (+) 213 WP_003153181.1 spore germination protein -
  KXY09_RS12395 (KXY09_12390) alr 2566138..2567319 (+) 1182 WP_015240193.1 alanine racemase -
  KXY09_RS12400 (KXY09_12395) spo0A 2567468..2568268 (-) 801 WP_003153177.1 sporulation transcription factor Spo0A Regulator
  KXY09_RS12405 (KXY09_12400) spoIVB 2568549..2569829 (-) 1281 WP_076424958.1 SpoIVB peptidase -
  KXY09_RS12410 (KXY09_12405) recN 2569993..2571723 (-) 1731 WP_136396491.1 DNA repair protein RecN Machinery gene
  KXY09_RS12415 (KXY09_12410) ahrC 2571755..2572204 (-) 450 WP_003153173.1 transcriptional regulator AhrC/ArgR -
  KXY09_RS12420 (KXY09_12415) - 2572301..2573146 (-) 846 WP_007612503.1 TlyA family RNA methyltransferase -

Sequence

Protein


Download         Length: 266 a.a.        Molecular weight: 29630.11 Da        Isoelectric Point: 6.1630

>NTDB_id=588907 KXY09_RS12400 WP_003153177.1 2567468..2568268(-) (spo0A) [Bacillus velezensis strain LABIM44]
MEKIKVCVADDNRELVSLLSEYIEGQDDMEVIGVAYNGQECLSLFKDKNPDVLVLDIIMPHLDGLAVLERLRESELEKQP
NVIMLTAFGQEDVTKKAVDLGASYFILKPFDMENLVGHIRQVSGNVSSVTHRAPSAQSSIIRSQPEPKRKNLDASITSII
HEIGVPAHIKGYLYLREAISMVYNDIELLGSITKVLYPDIAKKFNTTASRVERAIRHAIEVAWSRGNIDSISSLFGYTVS
MTKAKPTNSEFIAMVADKLRLEHKAS

Nucleotide


Download         Length: 801 bp        

>NTDB_id=588907 KXY09_RS12400 WP_003153177.1 2567468..2568268(-) (spo0A) [Bacillus velezensis strain LABIM44]
GTGGAGAAAATTAAAGTTTGTGTTGCTGATGATAATCGAGAGCTTGTAAGCCTGTTGAGTGAATATATAGAGGGACAGGA
TGATATGGAAGTGATCGGCGTTGCTTATAACGGACAGGAATGTCTTTCTTTGTTTAAAGATAAGAATCCAGATGTGCTCG
TTTTAGACATTATCATGCCGCATCTGGACGGACTTGCGGTTTTGGAGCGTCTGCGGGAATCAGAGCTCGAGAAGCAGCCG
AACGTCATCATGCTGACGGCATTCGGTCAGGAAGACGTTACGAAAAAAGCCGTCGATTTAGGCGCGTCCTATTTCATCCT
GAAGCCGTTTGATATGGAAAACCTTGTCGGCCATATCCGCCAGGTAAGCGGAAATGTCAGCAGTGTCACACACCGTGCGC
CGTCCGCGCAAAGCAGTATTATCCGCAGCCAGCCGGAACCGAAGCGGAAAAATCTCGATGCCAGCATTACAAGCATTATC
CATGAGATCGGTGTGCCTGCCCATATCAAAGGCTATCTTTATTTGCGTGAAGCCATTTCCATGGTGTATAACGATATTGA
ACTCCTCGGCAGCATCACAAAAGTCCTTTATCCCGACATCGCCAAAAAATTCAACACGACCGCAAGCCGTGTAGAACGGG
CCATCCGCCACGCCATTGAAGTCGCATGGAGCAGGGGAAATATTGATTCCATTTCTTCACTGTTCGGATATACGGTAAGC
ATGACAAAAGCAAAGCCAACCAACTCGGAATTCATCGCGATGGTTGCTGACAAGCTGAGATTAGAGCATAAAGCTTCGTA
A

Domains

Predicted by InterproScan.

Sporulation initiation factor Spo0A C terminal (Spo0A_C)

(156-259)

Response regulator receiver domain (Response_reg)

(6-119)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB I2C7K5

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  spo0A Bacillus subtilis subsp. subtilis str. 168

96.629

100

0.97