Detailed information    

insolico Bioinformatically predicted

Overview

Name   abrB   Type   Regulator
Locus tag   KXY09_RS07375 Genome accession   NZ_CP079719
Coordinates   1428617..1428901 (+) Length   94 a.a.
NCBI ID   WP_003154557.1    Uniprot ID   -
Organism   Bacillus velezensis strain LABIM44     
Function   repression of comK; repression of rok (predicted from homology)   
Competence regulation

Genomic Context

Location: 1423617..1433901
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  KXY09_RS07355 (KXY09_07355) - 1424860..1425768 (+) 909 WP_038463811.1 ketopantoate reductase family protein -
  KXY09_RS07360 (KXY09_07360) - 1425800..1427032 (-) 1233 WP_007409644.1 aminopeptidase -
  KXY09_RS07365 (KXY09_07365) - 1427133..1427267 (-) 135 WP_012117458.1 protein YkpC -
  KXY09_RS07370 (KXY09_07370) mreBH 1427339..1428346 (-) 1008 WP_003154558.1 cell shape-determining protein MreBH -
  KXY09_RS07375 (KXY09_07375) abrB 1428617..1428901 (+) 285 WP_003154557.1 AbrB/MazE/SpoVT family DNA-binding domain-containing protein Regulator
  KXY09_RS07380 (KXY09_07380) - 1429074..1430378 (+) 1305 WP_032874761.1 ATP-binding protein -
  KXY09_RS07385 (KXY09_07385) - 1430380..1431207 (+) 828 WP_136396333.1 gamma-glutamylcyclotransferase -
  KXY09_RS07390 (KXY09_07390) ktrC 1431248..1431913 (+) 666 WP_003154554.1 Ktr system potassium transporter KtrC -
  KXY09_RS07395 (KXY09_07395) ade 1432061..1433794 (+) 1734 WP_012117460.1 adenine deaminase -

Sequence

Protein


Download         Length: 94 a.a.        Molecular weight: 10584.45 Da        Isoelectric Point: 5.2271

>NTDB_id=588901 KXY09_RS07375 WP_003154557.1 1428617..1428901(+) (abrB) [Bacillus velezensis strain LABIM44]
MKSIGVVRKVDELGRIVMPIELRRALDIAIKDSIEFFVDGDKIVLKKYKPHGICLMTGEITPENQEYGNGKIILSPEGAK
MLLEEIEEALKDRS

Nucleotide


Download         Length: 285 bp        

>NTDB_id=588901 KXY09_RS07375 WP_003154557.1 1428617..1428901(+) (abrB) [Bacillus velezensis strain LABIM44]
ATGAAATCAATTGGTGTAGTAAGAAAAGTAGACGAACTCGGGCGTATTGTCATGCCGATTGAATTGAGAAGAGCATTGGA
TATCGCTATTAAAGATAGTATTGAATTTTTCGTTGACGGAGACAAAATTGTCTTGAAAAAATACAAGCCGCACGGCATTT
GCTTAATGACGGGGGAAATTACTCCCGAAAATCAGGAGTACGGCAACGGCAAAATTATTTTAAGTCCTGAAGGAGCGAAA
ATGCTGCTTGAGGAAATCGAGGAAGCGTTAAAAGATAGATCATAA

Domains

Predicted by InterproScan.

AbrB C-terminal domain (AbrB_C)

(54-88)

Antidote-toxin recognition MazE, bacterial antitoxin (MazE_antitoxin)

(8-51)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  abrB Bacillus subtilis subsp. subtilis str. 168

55.435

97.872

0.543