Detailed information    

insolico Bioinformatically predicted

Overview

Name   rok   Type   Regulator
Locus tag   KXY09_RS07265 Genome accession   NZ_CP079719
Coordinates   1408118..1408714 (+) Length   198 a.a.
NCBI ID   WP_012117447.1    Uniprot ID   -
Organism   Bacillus velezensis strain LABIM44     
Function   repression of comK (predicted from homology)   
Competence regulation

Genomic Context

Location: 1403118..1413714
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  KXY09_RS07235 (KXY09_07235) - 1403331..1403786 (+) 456 WP_007409622.1 flavodoxin -
  KXY09_RS07240 (KXY09_07240) dapD 1403868..1404578 (+) 711 WP_007409623.1 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-acetyltransferase -
  KXY09_RS07245 (KXY09_07245) - 1404649..1405773 (+) 1125 WP_012117444.1 N-acetyldiaminopimelate deacetylase -
  KXY09_RS07250 (KXY09_07250) - 1405834..1406079 (+) 246 WP_003154596.1 YkuS family protein -
  KXY09_RS07255 (KXY09_07255) - 1406113..1406919 (-) 807 WP_032874739.1 mechanosensitive ion channel family protein -
  KXY09_RS07260 (KXY09_07260) - 1407208..1407666 (+) 459 WP_168985022.1 TlpA disulfide reductase family protein -
  KXY09_RS07265 (KXY09_07265) rok 1408118..1408714 (+) 597 WP_012117447.1 transcriptional regulator Rok Regulator
  KXY09_RS07270 (KXY09_07270) - 1408735..1409727 (-) 993 WP_012117448.1 hypothetical protein -
  KXY09_RS07275 (KXY09_07275) - 1409873..1410475 (+) 603 WP_039251605.1 molybdenum cofactor guanylyltransferase -
  KXY09_RS07280 (KXY09_07280) - 1410527..1411546 (+) 1020 WP_007611113.1 molybdopterin-synthase adenylyltransferase MoeB -
  KXY09_RS07285 (KXY09_07285) glp 1411564..1412856 (+) 1293 WP_136396331.1 gephyrin-like molybdotransferase Glp -
  KXY09_RS07290 (KXY09_07290) mobB 1412817..1413338 (+) 522 WP_007409631.1 molybdopterin-guanine dinucleotide biosynthesis protein B -

Sequence

Protein


Download         Length: 198 a.a.        Molecular weight: 22495.54 Da        Isoelectric Point: 9.6909

>NTDB_id=588900 KXY09_RS07265 WP_012117447.1 1408118..1408714(+) (rok) [Bacillus velezensis strain LABIM44]
MFNEREALRLRLEQLNEAEVKVIREYQIERDKIYAKLRELDNTGSLSDTKKEFRPEKKSDSLPVLAELAAQEMRSYQKPQ
AQPQSSQPQMQSITSLPAGIPDGSTRRRRGTARPGSKAAKLREAAIKTLKRHNAAIKSSELQKEIEKESGLEIPNMTTFM
QSLIKMYPEVKKPYRGQYILEGEISQETAETANDTAAE

Nucleotide


Download         Length: 597 bp        

>NTDB_id=588900 KXY09_RS07265 WP_012117447.1 1408118..1408714(+) (rok) [Bacillus velezensis strain LABIM44]
ATGTTTAATGAAAGAGAAGCGCTGCGCTTACGTTTAGAACAATTGAACGAAGCAGAGGTAAAAGTCATTCGTGAATATCA
AATAGAACGTGATAAAATATATGCAAAACTGAGAGAATTAGACAATACAGGCAGCCTGTCCGATACAAAAAAAGAGTTTC
GTCCGGAGAAAAAAAGTGACTCTCTCCCGGTGCTTGCAGAGCTTGCAGCACAGGAAATGAGAAGCTATCAAAAGCCGCAG
GCACAGCCTCAATCCTCCCAGCCGCAGATGCAGTCTATTACGTCTCTTCCCGCCGGCATTCCAGACGGTTCTACAAGAAG
AAGAAGAGGGACGGCGAGACCGGGATCAAAAGCGGCAAAACTGCGCGAAGCAGCGATTAAAACATTGAAACGCCACAATG
CAGCGATTAAAAGTTCCGAACTGCAAAAGGAAATTGAAAAGGAAAGCGGCCTTGAAATTCCTAATATGACAACATTTATG
CAAAGCTTAATTAAAATGTATCCGGAAGTGAAAAAACCATACCGCGGCCAATATATTCTTGAGGGAGAAATTTCTCAGGA
AACAGCAGAAACGGCAAATGATACGGCTGCTGAATAA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rok Bacillus subtilis subsp. subtilis str. 168

86.082

97.98

0.843