Detailed information    

insolico Bioinformatically predicted

Overview

Name   nucA/comI   Type   Machinery gene
Locus tag   KXY09_RS01850 Genome accession   NZ_CP079719
Coordinates   345034..345471 (-) Length   145 a.a.
NCBI ID   WP_003156588.1    Uniprot ID   -
Organism   Bacillus velezensis strain LABIM44     
Function   cleavage of dsDNA into ssDNA (predicted from homology)   
DNA processing

Genomic Context

Location: 340034..350471
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  KXY09_RS01825 (KXY09_01825) - 341053..342189 (+) 1137 WP_076425805.1 zinc-dependent alcohol dehydrogenase -
  KXY09_RS01830 (KXY09_01830) - 342204..342638 (+) 435 WP_007409358.1 RDD family protein -
  KXY09_RS01835 (KXY09_01835) - 342711..343034 (+) 324 WP_168985161.1 YckD family protein -
  KXY09_RS01840 (KXY09_01840) - 343138..344574 (+) 1437 WP_076425807.1 glycoside hydrolase family 1 protein -
  KXY09_RS01845 (KXY09_01845) nin/comJ 344615..345013 (-) 399 WP_007609299.1 competence protein ComJ Regulator
  KXY09_RS01850 (KXY09_01850) nucA/comI 345034..345471 (-) 438 WP_003156588.1 NucA/NucB deoxyribonuclease domain-containing protein Machinery gene
  KXY09_RS01855 (KXY09_01855) hxlB 345830..346387 (-) 558 WP_076425808.1 6-phospho-3-hexuloisomerase -
  KXY09_RS01860 (KXY09_01860) hxlA 346384..347019 (-) 636 WP_015239130.1 3-hexulose-6-phosphate synthase -
  KXY09_RS01865 (KXY09_01865) - 347251..347613 (+) 363 WP_007409352.1 helix-turn-helix domain-containing protein -

Sequence

Protein


Download         Length: 145 a.a.        Molecular weight: 16072.35 Da        Isoelectric Point: 8.4850

>NTDB_id=588876 KXY09_RS01850 WP_003156588.1 345034..345471(-) (nucA/comI) [Bacillus velezensis strain LABIM44]
MKTLKALLLVLIIIAGAVAALIKGDLFSDNEQTVQKSDYDKVILFPSDRYPETAKHIKDAIKEGHSSICTIDRDGVHKRR
EQSLKHVPVKTGYDRDEWPMAVCKQGGNNASVEYISPADNRGAGSWVGHQLTNDPDGTRVLFKIK

Nucleotide


Download         Length: 438 bp        

>NTDB_id=588876 KXY09_RS01850 WP_003156588.1 345034..345471(-) (nucA/comI) [Bacillus velezensis strain LABIM44]
TTGAAAACATTAAAAGCACTGCTGCTTGTTCTTATCATCATTGCCGGAGCAGTCGCGGCCCTGATCAAGGGTGATCTTTT
CTCAGATAACGAGCAGACCGTTCAGAAGAGTGATTACGACAAAGTAATCTTATTTCCGTCCGATCGATATCCGGAAACAG
CAAAGCATATTAAGGACGCGATAAAAGAAGGACATTCCAGCATATGCACCATTGACAGAGACGGAGTACATAAGCGGCGT
GAGCAATCTCTTAAACATGTGCCCGTCAAAACGGGATACGATAGGGATGAATGGCCGATGGCGGTTTGTAAACAGGGCGG
AAACAACGCCTCCGTAGAATATATTTCTCCGGCAGACAACCGCGGAGCCGGCTCATGGGTCGGACACCAGCTTACCAATG
ATCCCGACGGAACGAGAGTATTATTTAAAATTAAGTAA

Domains

Predicted by InterproScan.

Deoxyribonuclease NucA/NucB (DNase_NucA_NucB)

(49-131)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  nucA/comI Bacillus subtilis subsp. subtilis str. 168

73.81

86.897

0.641