Detailed information    

insolico Bioinformatically predicted

Overview

Name   abrB   Type   Regulator
Locus tag   KXY09_RS00225 Genome accession   NZ_CP079719
Coordinates   40622..40912 (-) Length   96 a.a.
NCBI ID   WP_169510469.1    Uniprot ID   -
Organism   Bacillus velezensis strain LABIM44     
Function   repression of comK; repression of rok (predicted from homology)   
Competence regulation

Genomic Context

Location: 35622..45912
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  KXY09_RS00185 (KXY09_00185) darA 35639..35968 (+) 330 WP_004264734.1 cyclic di-AMP receptor DarA -
  KXY09_RS00190 (KXY09_00190) - 35981..36421 (+) 441 WP_004264730.1 YaaR family protein -
  KXY09_RS00195 (KXY09_00195) holB 36433..37422 (+) 990 WP_168985384.1 DNA polymerase III subunit delta' -
  KXY09_RS00200 (KXY09_00200) ricT 37425..38252 (+) 828 WP_004264723.1 competence/sporulation regulator complex protein RicT -
  KXY09_RS00205 (KXY09_00205) yabA 38267..38626 (+) 360 WP_004264720.1 replication initiation-control protein YabA -
  KXY09_RS00210 (KXY09_00210) - 38687..39430 (+) 744 WP_015239018.1 tRNA1(Val) (adenine(37)-N6)-methyltransferase -
  KXY09_RS00215 (KXY09_00215) - 39417..39716 (+) 300 WP_060561981.1 GIY-YIG nuclease family protein -
  KXY09_RS00220 (KXY09_00220) rsmI 39691..40572 (+) 882 WP_011996168.1 16S rRNA (cytidine(1402)-2'-O)-methyltransferase -
  KXY09_RS00225 (KXY09_00225) abrB 40622..40912 (-) 291 WP_169510469.1 transition state genes transcriptional regulator AbrB Regulator
  KXY09_RS00230 (KXY09_00230) metG 41396..43387 (+) 1992 WP_060561979.1 methionine--tRNA ligase -
  KXY09_RS00235 (KXY09_00235) - 43463..44230 (+) 768 WP_029326250.1 TatD family hydrolase -
  KXY09_RS00240 (KXY09_00240) - 44365..45690 (+) 1326 WP_023356663.1 G5 and 3D domain-containing protein -

Sequence

Protein


Download         Length: 96 a.a.        Molecular weight: 10753.57 Da        Isoelectric Point: 6.3482

>NTDB_id=588871 KXY09_RS00225 WP_169510469.1 40622..40912(-) (abrB) [Bacillus velezensis strain LABIM44]
MLMKSTGIVRKVDELGRVVIPIELRRTLGIAEKDALEIYVDDEKIILKKYKPNMTCQVTGEVSDDNLKLAGGKLVLSKEG
AEQIISEIQNQLQNQK

Nucleotide


Download         Length: 291 bp        

>NTDB_id=588871 KXY09_RS00225 WP_169510469.1 40622..40912(-) (abrB) [Bacillus velezensis strain LABIM44]
CTGTTAATGAAATCTACTGGTATCGTACGTAAAGTTGATGAACTTGGACGCGTCGTTATCCCTATCGAACTTCGCCGTAC
ACTGGGCATCGCAGAAAAAGACGCTCTTGAAATTTATGTTGATGATGAAAAAATCATCCTTAAAAAATATAAACCAAACA
TGACTTGCCAAGTAACTGGTGAAGTTTCTGATGATAACCTTAAACTTGCCGGCGGCAAATTGGTACTCAGCAAAGAAGGC
GCTGAGCAAATCATCTCTGAAATTCAAAACCAGCTTCAAAACCAAAAATAA

Domains

Predicted by InterproScan.

AbrB C-terminal domain (AbrB_C)

(55-90)

Antidote-toxin recognition MazE, bacterial antitoxin (MazE_antitoxin)

(10-52)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  abrB Bacillus subtilis subsp. subtilis str. 168

97.917

100

0.979