Detailed information    

insolico Bioinformatically predicted

Overview

Name   sxy/tfoX   Type   Regulator
Locus tag   KW561_RS17650 Genome accession   NZ_CP079668
Coordinates   3580280..3580876 (-) Length   198 a.a.
NCBI ID   WP_004179217.1    Uniprot ID   A0A085DH59
Organism   Klebsiella pneumoniae subsp. pneumoniae strain WRC28_CMC387MPCH     
Function   positive regulator of competence gene (predicted from homology)   
Competence regulation

Genomic Context

Location: 3575280..3585876
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  KW561_RS17635 (KW561_17625) helD 3575488..3577542 (-) 2055 WP_004179218.1 DNA helicase IV -
  KW561_RS17640 (KW561_17630) - 3577667..3578113 (+) 447 WP_002898425.1 YccF domain-containing protein -
  KW561_RS17645 (KW561_17635) yccS 3578131..3580266 (+) 2136 WP_002898422.1 YccS family putative transporter -
  KW561_RS17650 (KW561_17640) sxy/tfoX 3580280..3580876 (-) 597 WP_004179217.1 TfoX/Sxy family DNA transformation protein Regulator
  KW561_RS17655 (KW561_17645) sulA 3581225..3581734 (+) 510 WP_004179215.1 SOS-induced cell division inhibitor SulA -
  KW561_RS17660 (KW561_17650) ompA 3582087..3583157 (+) 1071 WP_002898408.1 porin OmpA -
  KW561_RS17665 (KW561_17655) matP 3583289..3583741 (-) 453 WP_002898404.1 macrodomain Ter protein MatP -
  KW561_RS17670 (KW561_17660) - 3583927..3585684 (+) 1758 WP_004179203.1 Lon protease family protein -

Sequence

Protein


Download         Length: 198 a.a.        Molecular weight: 22516.11 Da        Isoelectric Point: 10.0350

>NTDB_id=588630 KW561_RS17650 WP_004179217.1 3580280..3580876(-) (sxy/tfoX) [Klebsiella pneumoniae subsp. pneumoniae strain WRC28_CMC387MPCH]
MRKLVCPRLPQFQACVSPLGQLHTRPLFGGYSLAIDDTVFAMVAEGNIYLKACEQSAAYRVEHRNPLLTLRRHGRIVPLK
YYQIDDTLWRDEQQLFRLSLLSWQSAQREKNCRRASGRLKDLPNISFHMELQLIHAGIPDVRTLREVGAQEAWLRLRVNN
ASLSLSVLLALEGAIAGVHAAALPTPRRQELLEWAATR

Nucleotide


Download         Length: 597 bp        

>NTDB_id=588630 KW561_RS17650 WP_004179217.1 3580280..3580876(-) (sxy/tfoX) [Klebsiella pneumoniae subsp. pneumoniae strain WRC28_CMC387MPCH]
ATGAGAAAACTAGTTTGTCCGCGGCTCCCGCAATTTCAGGCCTGCGTCTCACCGCTGGGTCAACTGCATACTCGTCCGCT
CTTTGGCGGCTACAGCCTGGCTATTGATGATACGGTGTTTGCGATGGTGGCCGAGGGGAACATTTATCTGAAGGCCTGCG
AGCAGAGCGCTGCTTATCGGGTGGAACATCGTAATCCTCTGTTAACGCTGCGCCGACACGGCCGCATAGTGCCGCTGAAG
TATTATCAAATTGACGACACTTTATGGCGCGATGAGCAGCAGCTTTTTCGGCTATCGCTACTGTCGTGGCAGAGTGCGCA
GCGCGAAAAGAACTGCCGACGGGCGTCGGGCCGCCTGAAGGATTTACCCAATATCAGCTTTCATATGGAATTGCAGCTGA
TTCACGCGGGCATACCGGACGTTAGGACGTTGCGGGAAGTTGGTGCGCAGGAGGCATGGCTGAGGCTACGCGTAAATAAT
GCTTCTTTATCGCTGAGCGTATTGCTGGCGCTGGAGGGGGCGATTGCCGGGGTACATGCCGCCGCGCTCCCGACGCCACG
GCGTCAGGAGCTTCTCGAATGGGCGGCCACCCGGTAG

Domains

Predicted by InterproScan.

TfoX C-terminal domain (TfoX_C)

(117-194)

TfoX N-terminal domain (TfoX_N)

(16-105)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A085DH59

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sxy/tfoX Escherichia coli BW25113 strain K-12

51.269

99.495

0.51