Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA   Type   Machinery gene
Locus tag   BRPE64_RS05625 Genome accession   NC_021287
Coordinates   1215143..1216528 (+) Length   461 a.a.
NCBI ID   WP_044041282.1    Uniprot ID   -
Organism   Caballeronia insecticola     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1210143..1221528
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BRPE64_RS05605 (BRPE64_ACDS11630) thiE 1210926..1211573 (-) 648 WP_016345072.1 thiamine phosphate synthase -
  BRPE64_RS05610 (BRPE64_ACDS11640) thiM 1211576..1212391 (-) 816 WP_016345073.1 hydroxyethylthiazole kinase -
  BRPE64_RS05615 (BRPE64_ACDS11650) lplT 1212426..1213733 (-) 1308 WP_044041281.1 lysophospholipid transporter LplT -
  BRPE64_RS05620 (BRPE64_ACDS11660) alr 1214015..1215085 (+) 1071 WP_016345075.1 alanine racemase -
  BRPE64_RS05625 (BRPE64_ACDS11670) radA 1215143..1216528 (+) 1386 WP_044041282.1 DNA repair protein RadA Machinery gene
  BRPE64_RS05630 (BRPE64_ACDS11680) - 1216739..1217002 (+) 264 WP_044041989.1 DUF2866 domain-containing protein -
  BRPE64_RS05635 (BRPE64_ACDS11690) - 1216999..1218024 (-) 1026 WP_016345078.1 CaiB/BaiF CoA-transferase family protein -
  BRPE64_RS05640 (BRPE64_ACDS11700) - 1218064..1220004 (-) 1941 WP_016345079.1 ATP-binding cassette domain-containing protein -
  BRPE64_RS05645 (BRPE64_ACDS11720) - 1220160..1220651 (+) 492 WP_016345081.1 glutathione peroxidase -

Sequence

Protein


Download         Length: 461 a.a.        Molecular weight: 48759.15 Da        Isoelectric Point: 6.9993

>NTDB_id=58857 BRPE64_RS05625 WP_044041282.1 1215143..1216528(+) (radA) [Caballeronia insecticola]
MAKAAKAKTLYTCSECGGQAPKWTGQCAACGAWNTLLETVEQAPSAHRFQALAKSSPVRRLAEIEASDVPRFTTGVGEFD
RVLGGGLVPGGVVLIGGDPGIGKSTLLLQSLAEIARERPALYVSGEESGAQIALRAQRLGLIGEPGAVGDLALLAEIQLE
KIQATIDEHRPEVAVIDSIQTIYSEALTSAPGSVAQVRECAAQLTRIAKQTGTAIIMVGHVTKEGSLAGPRVLEHIVDTV
LYFEGDTHSSFRLVRAFKNRFGAVNELGVFAMTEKGLRGVANPSALFLSQHEQSVAGSCVLVTQEGSRPLLVEVQALVDT
AHVPNPRRLAVGLEQNRLALLLAVLHRHAGIACFDQDVFLNAVGGVKITEPAADLAVLLAIHSSLRNKPLPKGLITFGEV
GLAGEIRPSPRGQDRLKEAAKLGFSVALIPKANAPKQGIDGLKVIAVDRIEEAIDRVRDLE

Nucleotide


Download         Length: 1386 bp        

>NTDB_id=58857 BRPE64_RS05625 WP_044041282.1 1215143..1216528(+) (radA) [Caballeronia insecticola]
GTGGCAAAAGCAGCGAAGGCAAAAACGCTTTACACCTGTAGCGAATGCGGCGGACAGGCGCCGAAATGGACCGGCCAGTG
CGCCGCGTGCGGGGCCTGGAACACCTTGCTGGAAACGGTCGAGCAGGCGCCTTCGGCGCATCGCTTCCAGGCGCTCGCCA
AGAGTTCGCCGGTGCGGCGGCTCGCTGAAATCGAAGCGTCGGACGTGCCGCGCTTCACCACCGGCGTCGGCGAATTCGAT
CGCGTGCTGGGCGGCGGGCTGGTGCCGGGCGGCGTCGTGCTGATCGGCGGCGATCCGGGCATCGGCAAATCCACGCTGCT
GCTGCAATCGCTCGCGGAAATCGCGCGCGAGCGGCCCGCGCTCTATGTGAGCGGCGAGGAATCCGGCGCGCAGATCGCGT
TGCGCGCGCAGCGGCTCGGACTCATCGGCGAGCCGGGCGCGGTGGGCGATCTGGCGCTGCTCGCCGAGATCCAGCTCGAG
AAAATCCAGGCGACTATCGACGAGCACCGGCCCGAAGTCGCCGTGATCGACTCCATCCAGACCATCTACTCCGAAGCGCT
GACCTCCGCGCCTGGCTCGGTTGCGCAGGTGCGCGAGTGCGCGGCGCAACTGACGCGCATCGCCAAGCAGACGGGCACGG
CCATCATCATGGTCGGCCACGTGACGAAGGAGGGCAGTCTCGCGGGCCCGCGCGTGCTGGAACATATCGTCGATACCGTG
CTGTACTTCGAAGGCGACACCCATTCGTCGTTCCGGCTCGTGCGCGCGTTCAAGAACCGCTTCGGCGCGGTCAACGAACT
CGGCGTGTTCGCGATGACGGAGAAGGGCCTGCGCGGCGTGGCCAATCCGTCGGCGCTCTTTTTGTCGCAGCACGAGCAAA
GCGTCGCGGGATCGTGCGTGCTCGTGACACAGGAAGGATCGCGTCCGCTGCTGGTCGAAGTGCAGGCGCTCGTCGATACC
GCGCATGTGCCCAATCCGCGCCGGCTCGCGGTTGGTCTCGAACAGAACCGGCTCGCGCTTTTGCTCGCCGTGCTGCACCG
GCACGCGGGCATTGCGTGTTTCGATCAGGACGTGTTTCTGAACGCGGTGGGCGGCGTCAAGATCACCGAGCCTGCCGCCG
ATCTCGCGGTTCTGCTCGCGATCCATTCCTCGCTGCGCAACAAGCCGCTGCCCAAGGGCCTCATTACGTTCGGGGAAGTG
GGCCTCGCGGGCGAGATCCGGCCGTCGCCGCGCGGACAGGATCGTCTGAAGGAAGCCGCGAAGCTCGGTTTCTCGGTTGC
GCTGATTCCGAAGGCCAATGCGCCGAAGCAGGGTATCGACGGGTTGAAGGTGATCGCGGTGGACCGCATCGAAGAAGCGA
TCGATCGGGTCCGCGATCTCGAATGA

Domains

Predicted by InterproScan.

AAA domain (AAA_25)

(84-225)

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(11-36)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA Bacillus subtilis subsp. subtilis str. 168

50.54

100

0.508
  radA Streptococcus pneumoniae Rx1

47.609

99.783

0.475
  radA Streptococcus pneumoniae D39

47.609

99.783

0.475
  radA Streptococcus pneumoniae TIGR4

47.609

99.783

0.475
  radA Streptococcus pneumoniae R6

47.609

99.783

0.475
  radA Streptococcus mitis SK321

47.505

100

0.475
  radA Streptococcus mitis NCTC 12261

47.391

99.783

0.473

Multiple sequence alignment