Detailed information    

insolico Bioinformatically predicted

Overview

Name   sxy/tfoX   Type   Regulator
Locus tag   KW557_RS17250 Genome accession   NZ_CP079636
Coordinates   3468978..3469574 (-) Length   198 a.a.
NCBI ID   WP_004179217.1    Uniprot ID   A0A085DH59
Organism   Klebsiella pneumoniae subsp. pneumoniae strain WRC21_AI1646PC     
Function   positive regulator of competence gene (predicted from homology)   
Competence regulation

Genomic Context

Location: 3463978..3474574
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  KW557_RS17235 (KW557_17205) helD 3464186..3466240 (-) 2055 WP_014907883.1 DNA helicase IV -
  KW557_RS17240 (KW557_17210) - 3466365..3466811 (+) 447 WP_002898425.1 YccF domain-containing protein -
  KW557_RS17245 (KW557_17215) yccS 3466829..3468964 (+) 2136 WP_002898422.1 YccS family putative transporter -
  KW557_RS17250 (KW557_17220) sxy/tfoX 3468978..3469574 (-) 597 WP_004179217.1 TfoX/Sxy family DNA transformation protein Regulator
  KW557_RS17255 (KW557_17225) sulA 3469923..3470432 (+) 510 WP_004893150.1 SOS-induced cell division inhibitor SulA -
  KW557_RS17260 (KW557_17230) ompA 3470785..3471855 (+) 1071 WP_096645054.1 porin OmpA -
  KW557_RS17265 (KW557_17235) matP 3471987..3472439 (-) 453 WP_064162266.1 macrodomain Ter protein MatP -
  KW557_RS17270 (KW557_17240) - 3472625..3474382 (+) 1758 WP_062920818.1 AAA family ATPase -

Sequence

Protein


Download         Length: 198 a.a.        Molecular weight: 22516.11 Da        Isoelectric Point: 10.0350

>NTDB_id=588535 KW557_RS17250 WP_004179217.1 3468978..3469574(-) (sxy/tfoX) [Klebsiella pneumoniae subsp. pneumoniae strain WRC21_AI1646PC]
MRKLVCPRLPQFQACVSPLGQLHTRPLFGGYSLAIDDTVFAMVAEGNIYLKACEQSAAYRVEHRNPLLTLRRHGRIVPLK
YYQIDDTLWRDEQQLFRLSLLSWQSAQREKNCRRASGRLKDLPNISFHMELQLIHAGIPDVRTLREVGAQEAWLRLRVNN
ASLSLSVLLALEGAIAGVHAAALPTPRRQELLEWAATR

Nucleotide


Download         Length: 597 bp        

>NTDB_id=588535 KW557_RS17250 WP_004179217.1 3468978..3469574(-) (sxy/tfoX) [Klebsiella pneumoniae subsp. pneumoniae strain WRC21_AI1646PC]
ATGAGAAAACTAGTTTGTCCGCGGCTCCCGCAATTTCAGGCCTGCGTCTCACCGCTGGGTCAACTGCATACTCGTCCGCT
CTTTGGCGGCTACAGCCTGGCTATTGATGATACGGTGTTTGCGATGGTGGCCGAGGGGAACATTTATCTGAAGGCCTGCG
AGCAGAGCGCTGCTTATCGGGTGGAACATCGTAATCCTCTGTTAACGCTGCGCCGACACGGCCGCATAGTGCCGCTGAAG
TATTATCAAATTGACGACACTTTATGGCGCGATGAGCAGCAGCTTTTTCGGCTATCGCTACTGTCGTGGCAGAGTGCGCA
GCGCGAAAAGAACTGCCGACGGGCGTCGGGCCGCCTGAAGGATTTACCCAATATCAGCTTTCATATGGAATTGCAGCTGA
TTCACGCGGGCATACCGGACGTTAGGACGTTGCGGGAAGTTGGTGCGCAGGAGGCATGGCTGAGGCTACGCGTAAATAAT
GCTTCTTTATCGCTGAGCGTATTGCTGGCGCTGGAGGGGGCGATTGCCGGGGTACATGCCGCCGCGCTCCCGACGCCACG
GCGTCAGGAGCTTCTCGAATGGGCGGCTACCCGGTAG

Domains

Predicted by InterproScan.

TfoX C-terminal domain (TfoX_C)

(117-194)

TfoX N-terminal domain (TfoX_N)

(16-105)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A085DH59

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sxy/tfoX Escherichia coli BW25113 strain K-12

51.269

99.495

0.51