Detailed information    

insolico Bioinformatically predicted

Overview

Name   recN   Type   Machinery gene
Locus tag   SA27298_RS06505 Genome accession   NZ_AP018548
Coordinates   1335011..1336669 (-) Length   552 a.a.
NCBI ID   WP_003031389.1    Uniprot ID   -
Organism   Streptococcus anginosus strain CCUG 27928     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1330011..1341669
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SA27298_RS06480 (SA27298_1319) - 1330510..1331463 (+) 954 WP_018543565.1 iron chelate uptake ABC transporter family permease subunit -
  SA27298_RS06485 (SA27298_1320) - 1331456..1332418 (+) 963 WP_003031397.1 iron chelate uptake ABC transporter family permease subunit -
  SA27298_RS06490 (SA27298_1321) - 1332420..1333172 (+) 753 WP_003023720.1 ATP-binding cassette domain-containing protein -
  SA27298_RS06495 (SA27298_1322) - 1333196..1334170 (+) 975 WP_003031428.1 siderophore ABC transporter substrate-binding protein -
  SA27298_RS06500 (SA27298_1323) - 1334233..1334964 (-) 732 WP_003031430.1 metallophosphoesterase -
  SA27298_RS06505 (SA27298_1324) recN 1335011..1336669 (-) 1659 WP_003031389.1 DNA repair protein RecN Machinery gene
  SA27298_RS06510 (SA27298_1325) - 1336677..1337108 (-) 432 WP_003031395.1 arginine repressor -
  SA27298_RS06515 (SA27298_1326) - 1337101..1337916 (-) 816 WP_003031420.1 TlyA family RNA methyltransferase -
  SA27298_RS06520 (SA27298_1327) - 1337882..1338784 (-) 903 WP_003031414.1 polyprenyl synthetase family protein -
  SA27298_RS06525 (SA27298_1328) - 1338781..1338993 (-) 213 WP_003031417.1 exodeoxyribonuclease VII small subunit -
  SA27298_RS06530 (SA27298_1329) xseA 1338971..1340311 (-) 1341 WP_003031416.1 exodeoxyribonuclease VII large subunit -
  SA27298_RS06535 (SA27298_1330) - 1340501..1340998 (-) 498 WP_003031411.1 hypothetical protein -
  SA27298_RS06540 (SA27298_1331) - 1341038..1341235 (-) 198 WP_003031402.1 TraX family protein -

Sequence

Protein


Download         Length: 552 a.a.        Molecular weight: 62337.57 Da        Isoelectric Point: 4.5655

>NTDB_id=58830 SA27298_RS06505 WP_003031389.1 1335011..1336669(-) (recN) [Streptococcus anginosus strain CCUG 27928]
MLLEISIKNFAIIEEISLNFEQGMTVLTGETGAGKSIIIDAMNMMLGSRATTDVIRHGASKAEIEGLFAIEQSKALVEIF
EQQGLDMTEELIIRREIFQNGRSVSRINGQMVNLSVLRAVGQHLVDIHGQHDQEELMRPQLHIAMLDEFGDDAFFKLKAD
YQQTFDQYRQLRKQVLTIQKNQEENKARIDMLEYQIAEIEAANLKAGEDLALNQERDKLLNHKQIADTLTNAYAMLDDEE
FSSLANVRSAMNDMEAIEDYDATYKEIATNLSESYYVLEDVTKRLEDILEDLDFDGGRLLEVESRLDLIYSITRKYGGQV
DDVLAYFEQISKEYALLTGKNLSSDDLNKELKKLEKDLVSLAGRLSQARHELAQQLEAEIQQELQDLYMEKANFRVQFTK
GKFSRDGNEHVEFYISTNPGEDYKPLVKVASGGELSRLMLAIKSAFSRKEGKTSIVFDEVDTGVSGRVAQAIAQKIHKIG
SNGQVLAISHLPQVIAIADYQFFIEKISDEHSTVSTVRLLSNDERVEEIAKMLAGENVTQAALTQARELLKK

Nucleotide


Download         Length: 1659 bp        

>NTDB_id=58830 SA27298_RS06505 WP_003031389.1 1335011..1336669(-) (recN) [Streptococcus anginosus strain CCUG 27928]
ATGTTACTTGAAATTTCCATTAAAAATTTTGCAATTATTGAAGAGATTTCCCTCAATTTTGAGCAAGGCATGACCGTTTT
GACAGGTGAAACAGGGGCTGGAAAGTCTATTATTATTGATGCTATGAACATGATGCTAGGAAGCCGCGCGACAACAGATG
TGATTCGTCACGGTGCATCAAAAGCAGAGATTGAAGGGCTTTTTGCAATTGAGCAGAGTAAGGCTTTGGTTGAAATTTTT
GAGCAGCAAGGGCTTGATATGACAGAGGAGCTGATTATTCGGCGGGAAATTTTTCAAAATGGACGTAGTGTCAGTCGTAT
TAATGGTCAAATGGTTAATTTGTCTGTCTTGCGAGCTGTTGGACAGCATTTGGTGGATATTCACGGTCAACACGACCAAG
AAGAACTCATGCGACCGCAGCTGCATATTGCCATGTTGGACGAGTTTGGAGATGACGCATTTTTCAAGCTCAAAGCTGAT
TATCAACAGACTTTTGATCAGTATCGTCAGTTGCGTAAGCAGGTCTTAACAATTCAAAAGAATCAAGAAGAAAATAAAGC
GCGGATTGACATGCTGGAATATCAAATTGCAGAGATTGAAGCAGCTAATTTAAAAGCAGGTGAAGATTTAGCTTTAAATC
AAGAACGTGATAAGTTGCTCAATCATAAGCAGATTGCGGACACTTTGACCAATGCTTATGCCATGCTGGATGATGAAGAA
TTTTCTAGTTTAGCGAATGTTCGTTCTGCCATGAATGACATGGAAGCTATTGAAGACTATGACGCCACTTACAAAGAAAT
TGCGACCAACCTTTCTGAATCTTACTATGTGTTGGAAGATGTGACAAAGCGTTTGGAGGATATTCTAGAAGACTTGGATT
TTGATGGTGGCCGTCTCTTAGAAGTAGAAAGTCGCCTAGATTTAATCTATAGTATTACTCGCAAATACGGCGGTCAAGTA
GATGATGTCCTAGCTTATTTTGAGCAGATTTCTAAAGAATATGCTCTACTTACTGGAAAAAACCTTTCATCAGATGATTT
GAACAAAGAGCTGAAAAAGCTGGAAAAAGACTTGGTTTCTCTAGCAGGTCGTCTGAGTCAGGCTCGGCACGAATTAGCCC
AGCAGTTAGAAGCAGAGATTCAGCAAGAACTGCAAGACCTCTATATGGAAAAGGCGAATTTTCGAGTTCAATTTACCAAG
GGAAAATTTAGCCGCGATGGGAATGAACACGTTGAATTTTATATTTCGACTAATCCCGGTGAAGATTACAAACCGCTCGT
TAAGGTTGCTTCAGGTGGTGAATTGTCTCGTTTAATGTTGGCAATCAAGTCTGCTTTTTCTCGCAAGGAAGGCAAGACCA
GCATTGTCTTTGATGAAGTAGATACAGGTGTATCGGGACGTGTTGCACAAGCTATTGCCCAAAAGATTCATAAGATTGGC
TCAAACGGACAGGTCCTTGCCATCTCGCACTTACCTCAAGTGATTGCAATCGCGGATTATCAATTTTTCATTGAAAAAAT
ATCTGATGAGCATTCGACCGTTTCAACTGTTCGCTTGTTATCAAATGATGAGCGTGTCGAAGAAATTGCCAAAATGTTGG
CGGGCGAAAATGTGACCCAAGCAGCCCTCACGCAGGCTAGAGAGCTCTTGAAAAAATGA

Domains

Predicted by InterProScan.

RecF/RecN/SMC N terminal domain (SMC_N)

(2-508)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recN Bacillus subtilis subsp. subtilis str. 168

43.761

100

0.451

Multiple sequence alignment