Detailed information    

insolico Bioinformatically predicted

Overview

Name   dprA   Type   Machinery gene
Locus tag   KYG33_RS15455 Genome accession   NZ_CP079219
Coordinates   3393084..3394193 (-) Length   369 a.a.
NCBI ID   WP_219072032.1    Uniprot ID   -
Organism   Chryseobacterium sp. D764     
Function   ssDNA binding; loading RecA onto ssDNA (predicted from homology)   
DNA processing

Genomic Context

Location: 3388084..3399193
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  KYG33_RS15430 (KYG33_15425) - 3388999..3389970 (+) 972 WP_077413349.1 ion channel -
  KYG33_RS15435 (KYG33_15430) - 3389971..3390459 (+) 489 WP_219072030.1 YkgJ family cysteine cluster protein -
  KYG33_RS15440 (KYG33_15435) - 3390689..3390991 (+) 303 WP_077413351.1 hypothetical protein -
  KYG33_RS15445 (KYG33_15440) - 3391036..3391404 (-) 369 WP_180564928.1 iron chaperone -
  KYG33_RS15450 (KYG33_15445) gdhA 3391535..3392893 (-) 1359 WP_219072031.1 NADP-specific glutamate dehydrogenase -
  KYG33_RS15455 (KYG33_15450) dprA 3393084..3394193 (-) 1110 WP_219072032.1 DNA-processing protein DprA Machinery gene
  KYG33_RS15460 (KYG33_15455) - 3394228..3394995 (-) 768 WP_077413354.1 rhomboid family intramembrane serine protease -
  KYG33_RS15465 (KYG33_15460) - 3395243..3396169 (+) 927 WP_077413355.1 DUF3078 domain-containing protein -
  KYG33_RS15470 (KYG33_15465) - 3396397..3397320 (+) 924 WP_219072033.1 DUF3078 domain-containing protein -
  KYG33_RS15475 (KYG33_15470) sufD 3397397..3398704 (-) 1308 WP_077413671.1 Fe-S cluster assembly protein SufD -

Sequence

Protein


Download         Length: 369 a.a.        Molecular weight: 41536.33 Da        Isoelectric Point: 6.5879

>NTDB_id=588299 KYG33_RS15455 WP_219072032.1 3393084..3394193(-) (dprA) [Chryseobacterium sp. D764]
MISEEYFYAIALRECSQIGDIHFHKLVHTFGSAQEAWKRAKKEYKKLEGIGQKTVSDIGNNNHLEFAEEEINFCEKNNIQ
IRLKHLRETPLLLNECNDAPAILYQKGKIDDTLSKVSIVGTRNMTDYGQKFIEDFFEATQSSRYTSVSGLALGVDKEVHE
QSILHRKPTVAVLAHGFQYLYPSKNRKLSEKILEEGGTLITEFSSSQKPDRENFIQRNRIVAGISPATIVVETGFGGGSV
STAAFANDYNRDVFALPGKITDLCSQGCNQLIFHNKATAISTIKDLISMLGFNGPKEKIEELFPYSETTIQLSDNQYLIY
QSIKDQPQISLDDLSQKINIPPYKILPIILELELLGKVKSFSGRQFIAI

Nucleotide


Download         Length: 1110 bp        

>NTDB_id=588299 KYG33_RS15455 WP_219072032.1 3393084..3394193(-) (dprA) [Chryseobacterium sp. D764]
ATGATTTCCGAAGAATACTTTTATGCAATCGCCCTTCGCGAATGCAGCCAGATAGGTGATATTCATTTTCATAAACTTGT
CCATACTTTTGGAAGTGCTCAGGAAGCATGGAAAAGAGCAAAGAAAGAATATAAAAAGCTGGAAGGCATAGGACAAAAAA
CAGTTTCAGATATTGGGAATAACAACCATTTGGAATTCGCAGAAGAAGAAATAAATTTTTGCGAAAAGAATAATATTCAG
ATCAGGCTGAAGCATCTTCGTGAAACTCCTTTACTGCTTAATGAATGTAATGATGCACCGGCTATTCTTTATCAGAAAGG
AAAGATTGATGATACACTGTCAAAAGTAAGTATTGTAGGAACCCGGAATATGACTGACTATGGCCAAAAATTTATTGAAG
ATTTTTTTGAAGCAACCCAATCTTCAAGATATACATCAGTAAGCGGTCTCGCTCTTGGAGTTGACAAAGAGGTTCATGAA
CAGTCTATTCTTCATCGAAAACCCACTGTAGCAGTTCTTGCACATGGTTTCCAATATTTATATCCATCAAAAAACAGAAA
ACTTTCAGAGAAAATTTTGGAGGAAGGAGGTACATTAATCACAGAGTTCAGCTCTTCCCAAAAACCAGACCGTGAAAACT
TCATCCAGAGGAATAGAATTGTAGCAGGAATCTCTCCCGCAACCATTGTGGTGGAAACTGGTTTTGGAGGAGGATCTGTA
AGCACTGCTGCTTTTGCCAATGATTATAACCGTGATGTCTTTGCCCTTCCCGGAAAAATTACAGACCTCTGCAGCCAGGG
ATGTAATCAGCTGATTTTCCATAATAAAGCAACAGCCATTTCTACTATAAAAGATCTTATAAGCATGCTTGGGTTTAATG
GTCCCAAAGAAAAAATCGAAGAGTTATTTCCTTATAGTGAGACCACAATACAATTGTCTGACAATCAATATTTAATATAT
CAATCTATTAAAGACCAACCACAGATTTCTCTGGATGATCTGTCACAGAAAATTAATATTCCTCCCTACAAAATTTTACC
AATAATTTTGGAATTGGAACTTTTAGGGAAAGTAAAATCATTTTCCGGGAGGCAATTCATCGCAATTTAA

Domains

Predicted by InterproScan.

DNA recombination-mediator protein A (DNA_processg_A)

(74-279)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  dprA Riemerella anatipestifer ATCC 11845 = DSM 15868

51.648

98.645

0.509