Detailed information NTG0588294

Bioinformatically predicted

Overview

• Name: radA
• Type: Machinery gene
• Locus tag: KYG33_RS11445
• Genome accession: NZ_CP079219
• Coordinates: 2545126..2546475 (+)
• Length: 449 a.a.
• NCBI ID: WP_077418965.1
• Uniprot ID: -
• Organism: Chryseobacterium sp. D764
• Function: homologous recombination (predicted from homology) Homologous recombination

Genomic Context

Location: 2540126..2551475

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
KYG33_RS11430 (KYG33_11425)	yidC	2540519..2542318 (-)	1800	WP_077418967.1	membrane protein insertase YidC	-
KYG33_RS11435 (KYG33_11430)	-	2542497..2544104 (-)	1608	WP_219071771.1	CTP synthase	-
KYG33_RS11440 (KYG33_11435)	-	2544419..2544988 (-)	570	WP_077418966.1	YceI family protein	-
KYG33_RS11445 (KYG33_11440)	radA	2545126..2546475 (+)	1350	WP_077418965.1	DNA repair protein RadA	Machinery gene
KYG33_RS11450 (KYG33_11445)	-	2546584..2547177 (+)	594	WP_219071772.1	ACP phosphodiesterase	-
KYG33_RS11455 (KYG33_11450)	-	2547174..2548136 (-)	963	WP_219071773.1	phosphatase PAP2 family protein	-
KYG33_RS11460 (KYG33_11455)	-	2548263..2548778 (-)	516	WP_077418962.1	DUF6702 family protein	-

Sequence

Protein

• Length: 449 a.a.
• Molecular weight: 49871.44 Da
• Isoelectric Point: 6.6944

>NTDB_id=588294 KYG33_RS11445 WP_077418965.1 2545126..2546475(+) (radA) [Chryseobacterium sp. D764]
MAKLKTAYFCQNCGTQYPQWLGQCKNCGEWNSLVEEVVEKPSHKTPPFSKTKQHVINIVEVVTSEEPRIKTPSDELNRVL
GGGIVLGSVTLIGGEPGIGKSTLLLQLALKMKKKIFYVSGEESASQIKMRADRLTDIQNPNCFLFTETSLEKILHEAKKL
EPDFMIIDSIQTLQSQLIESSPGTVSQIRECSNEIIKYAKENNTPVFLVGHITKDGQIAGPKVLEHMVDVVLNFDGDRNH
LFRLLRANKNRFGSTSEIGIYEMVSQGLKEIKNPSEILITKKFEELSGNSVAVTLEGNRPMLLEIQALVSTAVYGTPQRS
STGFDSKRLNMLLAVLEKRAGFQLGAKDVFLNITGGIKTDDPALDLAVVASVLSSNEDIAISEHYCFAGEIGLSGEIRPV
AQVEQRITEAEKLGYEKIFVSNLNKIPKRKFGIKIEEVSKIEDFHERLF

Nucleotide

• Length: 1350 bp

>NTDB_id=588294 KYG33_RS11445 WP_077418965.1 2545126..2546475(+) (radA) [Chryseobacterium sp. D764]
ATGGCAAAACTGAAAACAGCATATTTCTGTCAAAACTGCGGAACACAATATCCACAATGGCTCGGACAATGTAAAAACTG
TGGAGAATGGAACTCTCTGGTGGAAGAAGTGGTTGAAAAACCTTCTCATAAAACTCCCCCTTTCTCAAAAACCAAACAAC
ATGTAATCAATATTGTTGAAGTGGTAACGAGTGAAGAGCCGAGAATAAAAACTCCTTCAGATGAACTGAACCGCGTTTTA
GGAGGTGGAATTGTTTTAGGTTCCGTTACTTTGATTGGTGGTGAACCGGGAATCGGGAAGTCTACCCTTCTGCTTCAGCT
TGCTTTAAAAATGAAGAAAAAAATATTCTATGTTTCGGGGGAGGAAAGTGCTTCTCAGATTAAAATGAGAGCAGACAGGC
TTACGGATATTCAAAATCCTAACTGCTTCCTTTTTACTGAGACATCATTGGAAAAAATTCTTCATGAGGCAAAAAAACTA
GAACCGGATTTTATGATTATTGACTCTATTCAGACTCTGCAGTCTCAACTGATAGAAAGCTCTCCGGGAACCGTTTCCCA
AATCCGGGAATGCTCCAATGAAATCATCAAATATGCCAAAGAAAATAATACGCCTGTTTTTCTTGTAGGACACATCACCA
AAGATGGTCAGATTGCCGGACCAAAAGTCCTGGAACATATGGTGGATGTAGTTTTGAACTTTGATGGGGACCGGAATCAC
CTTTTCAGATTGCTGAGAGCTAATAAAAACCGTTTTGGATCTACTTCTGAGATTGGTATCTATGAAATGGTTTCTCAGGG
ATTGAAAGAAATTAAAAATCCTTCTGAAATTCTGATCACCAAGAAATTTGAAGAACTTTCCGGGAACTCCGTTGCGGTAA
CTCTGGAGGGAAACCGGCCTATGCTTCTGGAGATTCAGGCATTGGTAAGTACTGCCGTTTATGGTACTCCTCAAAGAAGT
TCCACCGGGTTTGATTCCAAGAGGCTGAATATGCTTTTGGCTGTACTGGAAAAAAGAGCAGGTTTTCAATTGGGAGCTAA
AGACGTTTTCCTGAATATTACCGGAGGAATAAAAACAGACGATCCGGCACTGGATCTGGCAGTGGTAGCTTCTGTTCTTT
CATCCAATGAGGATATCGCCATCTCAGAACATTACTGCTTTGCCGGAGAAATCGGATTAAGTGGTGAAATACGTCCTGTA
GCACAGGTGGAACAAAGAATTACTGAGGCTGAAAAGCTTGGTTATGAAAAAATATTTGTGTCCAATCTTAATAAAATTCC
GAAAAGAAAATTTGGGATAAAGATCGAAGAAGTAAGTAAGATTGAGGATTTTCATGAGAGGCTTTTCTAA

Domains

Predicted by InterproScan.

• Rubredoxin metal binding domain (Zn_ribbon_LapB) (8-35)

• AAA domain (AAA_25) (65-217)

• Subunit ChlI of Mg-chelatase (ChlI) (338-423)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
radA	Bacillus subtilis subsp. subtilis str. 168	48.673	100	0.49
radA	Streptococcus pneumoniae Rx1	48.246	100	0.49
radA	Streptococcus pneumoniae D39	48.246	100	0.49
radA	Streptococcus pneumoniae R6	48.246	100	0.49
radA	Streptococcus pneumoniae TIGR4	48.246	100	0.49
radA	Streptococcus mitis NCTC 12261	48.246	100	0.49
radA	Streptococcus mitis SK321	50.118	94.209	0.472