Detailed information    

insolico Bioinformatically predicted

Overview

Name   recJ   Type   Machinery gene
Locus tag   SA27298_RS05430 Genome accession   NZ_AP018548
Coordinates   1107986..1110220 (-) Length   744 a.a.
NCBI ID   WP_003032528.1    Uniprot ID   -
Organism   Streptococcus anginosus strain CCUG 27928     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1102986..1115220
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SA27298_RS05415 (SA27298_1107) - 1105971..1106336 (+) 366 WP_003032491.1 GntR family transcriptional regulator -
  SA27298_RS05420 (SA27298_1108) - 1106340..1107035 (+) 696 WP_003032516.1 ABC transporter ATP-binding protein -
  SA27298_RS05425 (SA27298_1109) - 1107053..1107850 (+) 798 WP_003032492.1 hypothetical protein -
  SA27298_RS05430 (SA27298_1110) recJ 1107986..1110220 (-) 2235 WP_003032528.1 single-stranded-DNA-specific exonuclease RecJ Machinery gene
  SA27298_RS05435 (SA27298_1111) - 1110316..1110732 (-) 417 WP_003032540.1 GNAT family N-acetyltransferase -
  SA27298_RS05440 (SA27298_1112) - 1110710..1111447 (-) 738 WP_003032493.1 class I SAM-dependent methyltransferase -
  SA27298_RS05445 (SA27298_1113) - 1111457..1112212 (-) 756 WP_003032504.1 SDR family oxidoreductase -
  SA27298_RS05450 (SA27298_1114) - 1112222..1112830 (-) 609 WP_003032562.1 histidine phosphatase family protein -
  SA27298_RS05455 (SA27298_1115) rnz 1112866..1113795 (-) 930 WP_003032525.1 ribonuclease Z -
  SA27298_RS05460 (SA27298_1116) - 1113806..1114435 (-) 630 WP_018543524.1 cystathionine beta-lyase -

Sequence

Protein


Download         Length: 744 a.a.        Molecular weight: 83692.67 Da        Isoelectric Point: 4.4750

>NTDB_id=58825 SA27298_RS05430 WP_003032528.1 1107986..1110220(-) (recJ) [Streptococcus anginosus strain CCUG 27928]
MITSKYDWQIATNFSDESFIKKAKKLGLETSVANLVYQRGIQTEETLRDFLDPSLDQLHDPYELHDMDKAVTRIRQAIEN
YEQILIYGDYDADGMTSASIVKEALEQLGAECQVYLPNRFTDGYGPNASVYKYFIENQGISLIITVDNGVAGHEAIELAQ
SMGVDVIVTDHHSMPEVLPDAYAIIHPEHPEASYPFKYLAGCGVTFKLATALLEEVQVELLDLVAIGTIADMVSLTDENR
ILVKYGLSVLKNTQRIGLQELFKIAGIQENEVDEETVGFQIAPRLNALGRLDDPNPAIELLTGFDEEEARDIALMINQKN
EERKEIVQKIYDEAKTMVNLNKPVQVLAGEGWNPGVLGIVAGRLLEELHQPVIVLNIENDLAKGSARSIEAVDIFEALDP
HRDLFVAFGGHAGAAGMTLEASKLEALSQVLVAYIEDNQVDLSTKNELFLDEELSLPDLTLETLKNFEKLAPFGMDNKKP
VFYLKDFKVENARTMGAGNTHLKLKISQANVAFEVVAFGLGNLATEFSQTKNLELAVTLSVNKWSGQTSLQLMLVDARVN
GIQLFNIRGKNAPLPENVPVLRFSEEMPNLEKSRAVVVYDLPERLNQLKVIIQQGHFEAIYFKNEIAQPYYLTGFGTRDQ
FAKLYKTIYQFPEFDIRYKLKELAAYLKIDPILLIKMIQIFEELDFVTIQDGVMQVNKKAEKKAIENSHIYQELKKTVKE
QELMALGTVQEIYDYLIEKDEFSN

Nucleotide


Download         Length: 2235 bp        

>NTDB_id=58825 SA27298_RS05430 WP_003032528.1 1107986..1110220(-) (recJ) [Streptococcus anginosus strain CCUG 27928]
ATGATTACATCAAAATATGATTGGCAGATTGCCACAAATTTTTCAGATGAGAGCTTTATTAAAAAAGCTAAAAAACTTGG
CTTGGAGACTTCGGTAGCTAATCTGGTCTACCAGAGAGGAATCCAGACAGAAGAAACACTGCGAGATTTTCTAGATCCTA
GTTTGGACCAGCTGCATGATCCTTATGAACTGCATGATATGGATAAGGCAGTGACGCGCATTCGTCAAGCGATTGAAAAT
TATGAGCAGATCTTGATTTATGGCGATTATGATGCGGATGGCATGACTTCGGCTTCTATTGTTAAAGAAGCACTAGAACA
ACTTGGAGCAGAGTGTCAGGTCTATTTGCCCAATCGATTTACAGACGGTTATGGTCCTAACGCGAGTGTTTACAAGTATT
TTATTGAAAATCAGGGAATTTCACTCATCATTACAGTGGATAATGGTGTTGCAGGACATGAAGCAATCGAACTAGCTCAG
TCTATGGGAGTGGATGTCATTGTGACGGATCACCATTCTATGCCAGAGGTACTTCCTGATGCTTATGCAATTATTCACCC
AGAACATCCAGAAGCAAGCTACCCATTCAAATATTTAGCTGGTTGCGGTGTAACTTTTAAGTTAGCAACTGCTCTTTTAG
AGGAAGTACAAGTAGAGTTGCTAGATTTAGTCGCTATTGGAACTATAGCAGATATGGTCAGCCTAACAGATGAAAATCGC
ATTCTGGTCAAATATGGGCTAAGTGTCCTCAAAAACACTCAACGAATCGGCTTGCAGGAGCTTTTTAAGATTGCAGGTAT
TCAGGAAAATGAAGTGGATGAAGAAACAGTTGGTTTTCAGATAGCCCCTAGACTCAATGCTCTAGGTCGACTTGATGATC
CAAATCCTGCTATTGAACTTCTGACGGGCTTTGATGAGGAAGAAGCGCGTGATATTGCCCTGATGATTAACCAGAAAAAT
GAAGAGCGCAAAGAAATTGTTCAGAAGATCTATGATGAAGCCAAGACCATGGTTAATCTCAATAAACCTGTTCAGGTTCT
AGCTGGTGAAGGTTGGAATCCAGGTGTTTTGGGAATTGTGGCAGGGCGGCTTTTGGAAGAATTGCACCAGCCGGTCATTG
TCTTGAATATTGAAAATGATTTAGCAAAAGGCAGCGCCCGCAGCATTGAAGCAGTTGATATTTTTGAAGCGTTAGACCCT
CATCGAGATTTATTTGTGGCTTTTGGTGGGCATGCAGGGGCAGCTGGGATGACTCTAGAGGCCAGCAAGTTAGAAGCACT
CAGTCAGGTTTTGGTAGCATATATTGAAGATAATCAAGTGGATTTGTCCACTAAGAATGAGCTCTTTTTGGATGAGGAAT
TATCCTTGCCAGATTTGACACTAGAGACCCTCAAAAACTTTGAAAAGTTAGCTCCTTTTGGCATGGACAATAAAAAGCCT
GTTTTTTATTTGAAAGATTTTAAGGTTGAAAATGCCCGTACCATGGGGGCGGGAAATACTCACCTTAAGCTGAAAATTTC
CCAGGCTAACGTAGCTTTTGAAGTCGTAGCTTTTGGTCTAGGTAATCTTGCAACAGAATTTTCCCAAACTAAAAACTTAG
AGCTGGCGGTTACTCTGTCGGTCAATAAATGGAGCGGTCAAACTAGTCTCCAGCTTATGCTGGTAGATGCTAGGGTCAAT
GGGATTCAGCTCTTTAATATCCGAGGTAAAAATGCTCCTTTGCCTGAAAATGTGCCCGTCCTGCGTTTTTCAGAAGAAAT
GCCTAATTTGGAAAAGAGCAGAGCAGTTGTGGTGTATGACTTGCCTGAACGCCTAAATCAGCTCAAAGTAATCATTCAGC
AAGGACATTTTGAAGCAATTTACTTTAAAAATGAGATTGCTCAGCCCTATTATCTGACAGGTTTCGGAACGAGAGACCAG
TTTGCAAAACTCTATAAAACAATTTATCAATTTCCAGAGTTTGACATTCGTTATAAGCTCAAAGAACTAGCTGCTTATCT
CAAGATTGACCCAATTCTACTCATCAAGATGATTCAGATATTTGAAGAGCTGGACTTTGTGACAATTCAAGATGGAGTGA
TGCAAGTAAACAAAAAAGCAGAAAAAAAGGCTATTGAAAACAGCCATATTTATCAAGAACTGAAGAAAACAGTCAAGGAG
CAGGAGCTTATGGCTCTAGGAACGGTGCAGGAAATTTATGATTATCTGATAGAAAAAGATGAATTTTCAAACTAA

Domains

Predicted by InterProScan.

DHH family (DHH)

(83-228)

RecJ OB domain (RecJ_OB)

(451-556)

DHHA1 domain (DHHA1)

(317-434)

Single-strand DNA-specific exonuclease, C terminal domain (ssDNA-exonuc_C)

(590-734)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recJ Streptococcus pneumoniae strain D39V

76.486

99.462

0.761
  recJ Bacillus subtilis subsp. subtilis str. 168

38.144

100

0.398

Multiple sequence alignment