Detailed information NTG0058818

Bioinformatically predicted

Overview

• Name: rpoS
• Type: Regulator
• Locus tag: SA27298_RS04560
• Genome accession: NZ_AP018548
• Coordinates: 931246..932358 (-)
• Length: 370 a.a.
• NCBI ID: WP_003031450.1
• Uniprot ID: A0A380L3U2
• Organism: Streptococcus anginosus strain CCUG 27928
• Function: regulation of chitinases (predicted from homology) Competence regulation

Genomic Context

Location: 926246..937358

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
SA27298_RS04535 (SA27298_0926)	msrB	926712..927830 (-)	1119	WP_026248162.1	peptide-methionine (R)-S-oxide reductase MsrB	-
SA27298_RS04540 (SA27298_0927)	-	927843..928292 (-)	450	Protein_855	redoxin domain-containing protein	-
SA27298_RS04545 (SA27298_0928)	ccdA2	928420..929133 (-)	714	WP_108720864.1	thiol-disulfide oxidoreductase-associated membrane protein CcdA2	-
SA27298_RS04550 (SA27298_0929)	brnQ	929415..930743 (-)	1329	WP_018543490.1	branched-chain amino acid transport system II carrier protein	-
SA27298_RS04555 (SA27298_0930)	-	930898..931227 (-)	330	WP_003024629.1	metal-sulfur cluster assembly factor	-
SA27298_RS04560 (SA27298_0931)	rpoS	931246..932358 (-)	1113	WP_003031450.1	RNA polymerase sigma factor RpoD	Regulator
SA27298_RS04565 (SA27298_0932)	dnaG	932361..934136 (-)	1776	WP_003031452.1	DNA primase	-
SA27298_RS04570 (SA27298_0933)	mscL	934291..934671 (+)	381	WP_003031453.1	large conductance mechanosensitive channel protein MscL	-
SA27298_RS04575 (SA27298_0934)	rpsU	934912..935088 (-)	177	WP_000048054.1	30S ribosomal protein S21	-
SA27298_RS04580 (SA27298_0935)	-	935287..935625 (-)	339	WP_003024641.1	ATP cone domain-containing protein	-

Sequence

Protein

• Length: 370 a.a.
• Molecular weight: 42396.02 Da
• Isoelectric Point: 4.4553

>NTDB_id=58818 SA27298_RS04560 WP_003031450.1 931246..932358(-) (rpoS) [Streptococcus anginosus strain CCUG 27928]
MATKQKEVTTFDVQVAEFIRNHKKTGTATDDEINDQLVIPFTLNADGIEDLLQRIQDAGIAITDKEGNPSERVLNTEEEE
AELTDEELLGSNSAKVNDPVRMYLKEIGVVPLLTNEEEQELAVLVEQGDLEAKQRLAEANLRLVVSIAKRYVGRGMQFLD
LIQEGNMGLMKAVDKFDYTKGFKFSTYATWWIRQAITRAIADQARTIRIPVHMVETINKLVREQRNLLQELGQDPTPEQI
AERMDMTPDKVREILKIAQEPVSLETPIGEEDDSHLGDFIEDEVIENPVDYTTRIVLREQLDEVLDTLTDREENVLRLRF
GLDDGKMRTLEDVGKVFNVTRERIRQIEAKALRKLRHPSRSKPLRDFIED

Nucleotide

• Length: 1113 bp

>NTDB_id=58818 SA27298_RS04560 WP_003031450.1 931246..932358(-) (rpoS) [Streptococcus anginosus strain CCUG 27928]
ATGGCTACAAAACAAAAAGAAGTAACAACTTTTGATGTTCAAGTTGCAGAATTTATTCGCAACCATAAAAAAACTGGTAC
AGCAACCGATGATGAGATCAATGATCAATTAGTTATTCCATTTACTTTAAATGCTGATGGTATTGAGGATCTTCTTCAAC
GAATTCAGGACGCAGGGATTGCTATTACGGATAAAGAGGGCAACCCAAGTGAACGGGTTTTAAATACAGAGGAAGAAGAA
GCTGAATTAACAGATGAGGAGTTGCTTGGTAGCAATTCTGCTAAAGTGAACGACCCTGTCCGTATGTATTTAAAGGAAAT
TGGTGTTGTTCCGTTATTGACCAATGAAGAAGAGCAAGAATTAGCTGTTCTTGTGGAGCAAGGCGACTTAGAAGCGAAAC
AACGTTTGGCAGAAGCTAATTTGCGGTTGGTTGTCTCTATTGCTAAGCGCTATGTTGGACGCGGCATGCAGTTTCTTGAC
TTGATTCAAGAAGGCAATATGGGATTGATGAAAGCCGTTGACAAGTTTGACTATACCAAAGGTTTCAAATTTTCGACCTA
TGCCACTTGGTGGATTCGTCAAGCGATTACTCGTGCGATTGCTGACCAAGCGCGTACGATTCGGATTCCGGTTCACATGG
TTGAGACAATCAATAAATTAGTGCGGGAGCAACGAAATCTTTTGCAAGAATTGGGACAAGATCCAACGCCAGAGCAAATT
GCGGAGCGCATGGATATGACACCGGATAAAGTCCGTGAAATTTTGAAGATTGCGCAAGAACCGGTCTCTCTTGAAACTCC
AATTGGAGAAGAAGATGATAGTCATCTTGGCGATTTCATTGAGGATGAAGTGATTGAAAATCCAGTTGATTACACAACAC
GTATTGTCCTACGTGAGCAATTAGACGAGGTTCTTGATACATTAACAGACCGTGAAGAAAATGTACTACGTTTGCGTTTC
GGTCTAGATGATGGTAAAATGCGTACGCTGGAAGATGTTGGAAAAGTCTTTAACGTGACTCGTGAACGGATTCGACAAAT
TGAGGCCAAAGCCCTACGCAAATTGCGTCATCCAAGTCGCAGCAAGCCACTTCGCGATTTTATTGAGGACTAG

Domains

Predicted by InterProScan.

• Sigma-70 region 3 (Sigma70_r3) (215-291)

• Sigma-70 region 2 (Sigma70_r2) (136-205)

• Sigma-70 factor, region 1.2 (Sigma70_r1_2) (98-130)

• Sigma-70 factor, region 1.1 (Sigma70_r1_1) (14-87)

• Sigma-70, region 4 (Sigma70_r4) (304-357)

3D structure

• AlphaFold DB: A0A380L3U2

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
rpoS	Vibrio cholerae O1 biovar El Tor strain E7946	46.918	78.919	0.37