Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilA   Type   Machinery gene
Locus tag   M1S15_RS08140 Genome accession   NZ_CP096700
Coordinates   1694335..1695441 (+) Length   368 a.a.
NCBI ID   WP_134232948.1    Uniprot ID   -
Organism   Acinetobacter baumannii strain 5768     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1689335..1700441
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  M1S15_RS08105 (M1S15_08105) grxD 1689680..1690021 (-) 342 WP_000138830.1 Grx4 family monothiol glutaredoxin -
  M1S15_RS08110 (M1S15_08110) - 1690249..1691457 (+) 1209 WP_000129953.1 aspartate aminotransferase family protein -
  M1S15_RS08115 (M1S15_08115) - 1691508..1691939 (-) 432 WP_000156920.1 CBS domain-containing protein -
  M1S15_RS08120 (M1S15_08120) - 1692080..1692454 (-) 375 WP_001087274.1 DUF2750 domain-containing protein -
  M1S15_RS08125 (M1S15_08125) - 1692992..1693225 (-) 234 WP_000616034.1 hypothetical protein -
  M1S15_RS08130 (M1S15_08130) - 1693441..1693800 (+) 360 WP_000185571.1 hypothetical protein -
  M1S15_RS08135 (M1S15_08135) - 1693901..1694227 (+) 327 WP_000955083.1 hypothetical protein -
  M1S15_RS08140 (M1S15_08140) pilA 1694335..1695441 (+) 1107 WP_134232948.1 signal recognition particle-docking protein FtsY Machinery gene
  M1S15_RS08145 (M1S15_08145) - 1695631..1696227 (+) 597 WP_000102943.1 nitroreductase family protein -
  M1S15_RS08150 (M1S15_08150) - 1696453..1697124 (+) 672 WP_000175350.1 DUF2057 domain-containing protein -
  M1S15_RS08155 (M1S15_08155) - 1697197..1697721 (+) 525 WP_000593801.1 GNAT family N-acetyltransferase -
  M1S15_RS08160 (M1S15_08160) - 1697734..1698033 (-) 300 WP_085916945.1 cyd operon YbgE family protein -
  M1S15_RS08165 (M1S15_08165) cydX 1698034..1698135 (-) 102 WP_000270276.1 cytochrome bd-I oxidase subunit CydX -
  M1S15_RS08170 (M1S15_08170) cydB 1698149..1699294 (-) 1146 WP_000575152.1 cytochrome d ubiquinol oxidase subunit II -

Sequence

Protein


Download         Length: 368 a.a.        Molecular weight: 39947.78 Da        Isoelectric Point: 4.9872

>NTDB_id=588156 M1S15_RS08140 WP_134232948.1 1694335..1695441(+) (pilA) [Acinetobacter baumannii strain 5768]
MQQQSNMQNKFLIDAEIGDDDVTLPNLPAIDVPIVESPVKQEVKAEEVVEAAPSTEPEQPKSGFFGRMKEGLSKTRRNFT
DGMVNILIGGKEIDDELLEEVEEQLLVADIGVDATKTIITNLTERTARGDLIYSHSLYKALQEELVALLAPRVKPLHIDP
NKSPYVILMVGVNGVGKTTTIGKLAKRLQGEGKKVMLAAGDTFRAAATEQLQIWGERNDIAVVAQGHGADSASVIFDAFE
SARAKGIDVLIADTAGRLHNKSNLMEELKKVKRVMQKIDATVPHEIMLVVDAGTGQNAINQVQEFDQAVGLTGITITKLD
GTAKGGVLFNIASRTHVPIRFIGVGEKIDDLRPFSAKSFVAALFETEK

Nucleotide


Download         Length: 1107 bp        

>NTDB_id=588156 M1S15_RS08140 WP_134232948.1 1694335..1695441(+) (pilA) [Acinetobacter baumannii strain 5768]
ATGCAACAACAATCGAATATGCAAAATAAATTCTTGATAGATGCTGAGATCGGGGATGACGATGTCACATTGCCTAATTT
ACCTGCTATCGATGTTCCTATCGTTGAGTCACCTGTTAAGCAAGAAGTAAAAGCTGAAGAAGTTGTCGAGGCTGCACCTT
CTACAGAACCTGAGCAACCAAAATCTGGTTTCTTTGGACGAATGAAAGAAGGCTTGAGCAAAACTCGCCGTAATTTCACC
GATGGGATGGTTAATATCTTAATTGGTGGGAAAGAAATTGATGATGAGTTGCTTGAAGAAGTCGAAGAGCAATTATTAGT
TGCAGATATTGGTGTTGATGCAACAAAAACGATTATTACCAACTTAACTGAACGTACTGCTCGTGGTGATTTGATCTATT
CACATTCACTTTATAAAGCCTTGCAAGAAGAGTTAGTTGCTTTGCTTGCTCCACGTGTGAAGCCTTTGCATATTGACCCT
AATAAATCACCTTATGTGATTTTAATGGTTGGGGTAAATGGTGTTGGAAAAACAACAACAATTGGTAAATTAGCGAAGCG
TTTACAAGGTGAAGGCAAAAAAGTGATGTTGGCGGCAGGTGATACATTCCGTGCTGCTGCTACTGAACAATTGCAAATCT
GGGGTGAGCGTAACGATATTGCTGTAGTTGCTCAAGGTCATGGTGCCGATAGTGCATCAGTTATTTTTGATGCTTTTGAA
AGTGCGCGAGCTAAAGGTATTGATGTACTGATTGCAGATACTGCGGGCCGTTTGCATAACAAAAGTAATTTGATGGAAGA
GCTTAAGAAAGTTAAGCGTGTTATGCAAAAAATTGATGCAACAGTGCCTCATGAAATTATGTTGGTTGTAGATGCGGGTA
CTGGGCAAAATGCAATCAACCAAGTACAAGAATTTGACCAGGCTGTCGGTTTAACAGGTATTACCATTACTAAGTTGGAT
GGTACAGCAAAAGGTGGAGTATTATTTAATATTGCTAGTCGTACTCATGTGCCAATTCGTTTCATTGGTGTGGGTGAAAA
AATTGATGATTTAAGACCATTCTCGGCGAAATCGTTTGTTGCAGCACTATTTGAAACTGAAAAATAA

Domains

Predicted by InterProScan.

SRP54-type protein, helical bundle domain (SRP54_N)

(83-145)

SRP54-type protein, GTPase domain (SRP54)

(165-364)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilA Neisseria gonorrhoeae MS11

51.724

86.685

0.448