Detailed information    

insolico Bioinformatically predicted

Overview

Name   xerS   Type   Machinery gene
Locus tag   SA27298_RS04315 Genome accession   NZ_AP018548
Coordinates   883373..884443 (-) Length   356 a.a.
NCBI ID   WP_018543480.1    Uniprot ID   -
Organism   Streptococcus anginosus strain CCUG 27928     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 878373..889443
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SA27298_RS04295 (SA27298_0881) - 878383..879426 (+) 1044 WP_003033188.1 dihydrolipoamide acetyltransferase -
  SA27298_RS04300 (SA27298_0882) lpdA 879458..881164 (+) 1707 WP_003033187.1 dihydrolipoyl dehydrogenase -
  SA27298_RS04305 (SA27298_0883) - 881173..882162 (+) 990 WP_003033190.1 lipoate--protein ligase -
  SA27298_RS04310 (SA27298_0884) ucpA 882514..883311 (+) 798 WP_003033189.1 SDR family oxidoreductase UcpA -
  SA27298_RS04315 (SA27298_0885) xerS 883373..884443 (-) 1071 WP_018543480.1 tyrosine recombinase XerS Machinery gene
  SA27298_RS04320 (SA27298_0886) - 884698..884880 (-) 183 WP_126438393.1 ABC transporter ATP-binding protein -
  SA27298_RS04325 (SA27298_0887) ffh 885039..886589 (-) 1551 WP_003031052.1 signal recognition particle protein -
  SA27298_RS04330 (SA27298_0888) - 886662..886994 (-) 333 WP_003031055.1 putative DNA-binding protein -
  SA27298_RS04335 (SA27298_0889) - 887110..887808 (-) 699 WP_022524397.1 GntR family transcriptional regulator -

Sequence

Protein


Download         Length: 356 a.a.        Molecular weight: 41301.36 Da        Isoelectric Point: 9.3193

>NTDB_id=58814 SA27298_RS04315 WP_018543480.1 883373..884443(-) (xerS) [Streptococcus anginosus strain CCUG 27928]
MKREILLERIEKLKAIMPWYVLEYYQSKLTVPYSFTTLYEYLKEYDRFFHWILDSGIADGPQIAEIPLSVLENMTKKDME
AFILYLRERPLLNANTTQNGVSQTTINRTLSALSSLYKYLTEEVENENGEPYFYRNVMKKVSTKKKRETLAARAENIKQK
LFLGEETEQFLNYIDEEYPKNLSNRALSSFDKNKERDLAIIALLLASGVRLSEAVNLDLKDLNLKMMVIEVTRKGGKRDS
VNVAAFAKAYLERYLEVRSKRYKAEKSDTALFLTEYRGVPNRIDASSVEKMVAKYSEDFKVRVTPHKLRHTLATRLYDAT
KSQVLVSHQLGHASTQVTDLYTHIVNDEQKNALDNL

Nucleotide


Download         Length: 1071 bp        

>NTDB_id=58814 SA27298_RS04315 WP_018543480.1 883373..884443(-) (xerS) [Streptococcus anginosus strain CCUG 27928]
ATGAAACGCGAAATATTGTTAGAAAGAATTGAAAAACTAAAGGCCATCATGCCTTGGTACGTTTTGGAATACTATCAGTC
TAAATTGACTGTTCCATACAGTTTTACAACCTTATATGAATATCTCAAAGAATATGATCGCTTTTTTCATTGGATTTTAG
ACTCTGGAATTGCTGATGGGCCGCAGATTGCAGAAATTCCTCTGTCAGTATTGGAAAATATGACTAAAAAAGATATGGAA
GCGTTTATTCTTTACTTACGGGAGCGTCCATTGCTTAATGCTAATACTACGCAAAACGGAGTATCGCAAACCACCATTAA
TCGAACTCTTTCTGCTCTCTCTAGCCTTTATAAATATTTAACTGAAGAGGTGGAAAACGAGAATGGGGAACCTTATTTCT
ATCGTAATGTCATGAAAAAAGTGTCTACTAAGAAAAAGAGAGAGACTTTAGCTGCGCGCGCTGAAAACATCAAGCAAAAA
CTCTTTTTGGGCGAAGAAACTGAACAATTTTTGAATTATATTGATGAAGAATACCCTAAAAATTTATCAAATCGGGCTCT
CTCCTCTTTTGACAAAAATAAAGAGCGAGATTTGGCAATCATAGCACTGCTTCTTGCATCTGGTGTTCGTCTATCCGAGG
CAGTAAATCTTGATTTGAAAGACCTAAATCTCAAAATGATGGTCATTGAAGTTACTCGTAAGGGCGGGAAAAGAGATTCT
GTCAATGTTGCAGCTTTTGCCAAAGCTTATTTGGAAAGGTACCTGGAGGTTCGCTCTAAACGTTATAAAGCTGAAAAATC
AGACACTGCCCTCTTTTTGACAGAATATAGAGGTGTTCCTAACCGGATTGATGCTTCTAGTGTAGAAAAGATGGTTGCTA
AGTATTCTGAAGATTTCAAAGTTCGAGTGACACCTCACAAACTCCGCCATACGCTGGCTACTCGACTTTATGATGCTACT
AAATCTCAAGTTTTGGTCAGTCATCAGCTAGGACATGCCAGTACTCAAGTTACAGATCTCTACACCCATATTGTTAATGA
CGAACAAAAAAATGCATTGGATAATTTATAA

Domains

Predicted by InterProScan.

Phage integrase, N-terminal SAM-like domain (Phage_int_SAM_4)

(33-122)

Phage integrase family (Phage_integrase)

(188-344)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  xerS Streptococcus pneumoniae R6

88.483

100

0.885

Multiple sequence alignment