Detailed information    

insolico Bioinformatically predicted

Overview

Name   rexA   Type   Machinery gene
Locus tag   SA27298_RS02925 Genome accession   NZ_AP018548
Coordinates   596038..599718 (+) Length   1226 a.a.
NCBI ID   WP_003030984.1    Uniprot ID   -
Organism   Streptococcus anginosus strain CCUG 27928     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 591038..604718
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SA27298_RS02915 (SA27298_0600) - 591434..592648 (+) 1215 WP_003030981.1 ABC transporter permease -
  SA27298_RS02920 (SA27298_0601) rexB 592769..596041 (+) 3273 WP_003030982.1 ATP-dependent nuclease subunit B Machinery gene
  SA27298_RS02925 (SA27298_0602) rexA 596038..599718 (+) 3681 WP_003030984.1 helicase-exonuclease AddAB subunit AddA Machinery gene
  SA27298_RS02930 (SA27298_0603) glgB 600239..602149 (+) 1911 WP_003030447.1 1,4-alpha-glucan branching protein GlgB -
  SA27298_RS02935 (SA27298_0604) - 602153..603295 (+) 1143 WP_003025294.1 glucose-1-phosphate adenylyltransferase -
  SA27298_RS02940 (SA27298_0605) glgD 603285..604424 (+) 1140 WP_003030501.1 glucose-1-phosphate adenylyltransferase subunit GlgD -

Sequence

Protein


Download         Length: 1226 a.a.        Molecular weight: 141419.17 Da        Isoelectric Point: 5.3030

>NTDB_id=58797 SA27298_RS02925 WP_003030984.1 596038..599718(+) (rexA) [Streptococcus anginosus strain CCUG 27928]
MRQIPFLSQEEIYTLQDQEAQSNKAQKRTPEQIEAIYSSGQNILVSASAGSGKTFVMVQRIIDQILRGVRIDHLFISTFT
VKAASELKERLEKELSKALKATGDEELKQHLSQQLADIPNADIGTMDSFTQKVLNKYGYLLELAPNFRILQNASEQLLLQ
NEVFEQVFEEFYQSDQAALFKKLVKNFTGQRKDLLGFREQIYKIYAFLQSTSSPIAWLEKDFLKGYERADFQEEKAQLLA
QTKEVLFDLEEFFHYHLANEAKEFPKAKYLENVQSVLDCLVSLQEQSSEEAYLTALDRIVEISRASNGKALTNSGRKEEL
KEIISAYNEKRKEKIQVLRDLADQFYRFEFQVTYHEEAKEILLVLQQFMKSFVTSYLQRKKEENAFEFADINHFAIQILE
EFPDVRHFYRTKYHEVMVDEYQDTNHTQERMLELLSIGHNRFMVGDIKQSIYRFRQADPQIFNEKFKTYQEDSRQGKLIV
LKENFRSHVEVLEATNDVFKRLMDEEVGEIDYNETHYLVAGNPAKKAPNPQYQTEFLIYDGTLETDNEENDKDVSSVSAG
EVALVIKEIIRLHNEENVPFEDMTLLTASRTRNDVILSEFAKYGIPVVSDGGEDNYLQSVEVMVMLDTLRTINNPLNDYA
LVALLKSPMFTFTEDELARLALQKKVTEATYVTHQENLYEKLKNSLSGNGQHPELITLPLLKKIQQFQEILQDWRKFAKT
NSLYDLLWKIYQDRFYYDYVGALPNGAGRQANLYALTLRANDYEKMSFKGLSRFIGMIDKILETQNDLASVVIAAPKHAV
RLMTVHKSKGLEFKYVFLLNMDKVFNRKDSSSALIISRQNGVGIKYVADVVVDAADELAPNHVRLSIDTLPYVQNEREIH
LASISEQMRLLYVAMTRAERKLYLVGKGRQESLEKKTFPAPENGRLAASIRQTMTSFQDWIWALQTVFEKDDLAFSTQFV
TDSDLTSEKIGQLKLKERIVEENLAHNRQSEDIRRALDILENVDRLNTQYRAAIHLPSVRTPSQIKKFYEPIMDTDGVEI
MEKKTPDFIGKTSFELPDFAKKAPVTGAQIGSAVHELMQRIPLNQLPTIAILKETLAQVQAEETVKKKIDLQKIASFFET
ELGQLLLKQADKVYREAPFAMLKQDQASGQDFVVRGILDGYLLLADRIILFDYKTDQYTNPSELVERYQAQLSLYAEALR
RSYGIEKIEKYLVLLSGVQLQVVKVD

Nucleotide


Download         Length: 3681 bp        

>NTDB_id=58797 SA27298_RS02925 WP_003030984.1 596038..599718(+) (rexA) [Streptococcus anginosus strain CCUG 27928]
ATGAGACAGATTCCATTTTTGAGTCAGGAAGAAATCTATACTTTGCAGGACCAAGAAGCCCAGTCTAACAAAGCTCAAAA
ACGTACACCAGAGCAAATCGAAGCCATTTACTCCTCTGGTCAAAATATCCTTGTGTCTGCTTCTGCAGGATCAGGAAAAA
CCTTTGTTATGGTGCAACGGATTATTGACCAAATTCTGCGAGGAGTTCGCATTGACCATCTCTTCATTTCGACCTTTACC
GTTAAAGCCGCAAGTGAGCTAAAAGAGCGCTTGGAGAAAGAGTTATCCAAGGCTTTGAAGGCAACAGGCGATGAGGAACT
CAAACAGCATTTGTCACAGCAATTAGCTGATATTCCCAATGCTGACATTGGTACCATGGATTCTTTCACCCAAAAGGTCC
TCAATAAATATGGTTATCTCCTAGAATTGGCGCCGAATTTTCGCATTTTGCAAAATGCGAGTGAGCAGTTATTGCTACAA
AACGAAGTTTTTGAGCAAGTTTTTGAAGAATTCTATCAATCTGATCAGGCTGCTTTATTTAAAAAATTAGTCAAAAACTT
TACCGGTCAAAGAAAAGATTTGCTTGGTTTTCGAGAGCAGATTTATAAGATTTATGCTTTTTTGCAATCCACTAGTAGTC
CAATAGCATGGTTGGAAAAAGATTTTTTGAAAGGCTATGAACGTGCAGATTTCCAAGAAGAAAAAGCGCAACTTTTGGCA
CAAACAAAAGAAGTCCTTTTTGACCTAGAAGAATTTTTCCATTATCATTTGGCGAATGAAGCCAAGGAATTTCCCAAAGC
AAAATACCTTGAGAATGTGCAGAGCGTGCTTGATTGTCTGGTAAGCTTACAAGAGCAGTCCTCTGAGGAAGCTTATCTCA
CAGCACTTGATAGAATTGTAGAGATTTCACGTGCAAGCAATGGGAAAGCTTTGACAAACAGCGGACGCAAAGAAGAATTA
AAAGAAATTATCAGCGCTTATAATGAAAAACGTAAGGAAAAAATTCAAGTTTTACGTGATTTAGCGGATCAATTTTATCG
CTTTGAATTTCAAGTGACCTATCATGAGGAAGCCAAGGAAATCTTGCTTGTCTTGCAGCAATTTATGAAATCGTTTGTGA
CAAGCTATCTACAACGGAAAAAAGAAGAAAATGCGTTTGAATTTGCAGATATCAATCATTTTGCCATTCAGATTTTAGAA
GAATTTCCTGATGTGCGCCACTTTTATCGGACAAAATACCATGAAGTCATGGTGGATGAGTATCAAGATACCAACCACAC
GCAGGAGCGTATGCTGGAGCTGTTATCAATTGGGCATAATCGCTTTATGGTGGGGGATATTAAGCAGTCTATTTATCGTT
TTCGTCAGGCTGATCCGCAGATTTTTAATGAGAAATTTAAAACTTATCAAGAGGATAGCCGGCAAGGGAAATTGATTGTT
TTGAAAGAGAATTTCCGCAGTCATGTGGAAGTCTTGGAAGCCACGAATGACGTTTTCAAACGCCTCATGGATGAGGAAGT
GGGAGAAATTGATTATAATGAAACGCATTATCTGGTAGCTGGAAATCCTGCTAAAAAAGCACCAAATCCACAATATCAGA
CGGAATTTCTCATTTATGACGGAACGCTTGAGACGGATAATGAGGAGAATGACAAGGATGTTTCTTCTGTTTCTGCAGGA
GAAGTAGCGCTGGTCATTAAGGAAATTATCCGTCTGCACAATGAGGAAAATGTCCCATTTGAAGATATGACATTGCTAAC
GGCTTCGCGGACGCGCAACGATGTGATTTTATCTGAGTTTGCCAAATACGGTATCCCAGTCGTTTCCGACGGTGGCGAGG
ATAATTATTTGCAATCTGTAGAAGTTATGGTGATGTTGGATACCCTGCGTACGATTAACAATCCGCTCAATGATTACGCT
TTAGTGGCGCTCTTAAAGTCACCGATGTTCACCTTTACTGAGGATGAATTGGCTCGTTTGGCCTTGCAAAAAAAGGTGAC
AGAAGCTACTTATGTTACTCATCAGGAAAATCTCTATGAGAAATTGAAAAATTCTCTGAGTGGGAACGGTCAACATCCCG
AACTCATCACACTTCCTCTTTTAAAGAAAATCCAGCAGTTTCAAGAAATACTGCAGGATTGGCGAAAGTTTGCAAAAACC
AATTCGCTCTATGATTTGCTTTGGAAAATCTATCAAGACCGCTTTTATTATGACTATGTAGGAGCCCTACCAAATGGAGC
AGGGCGTCAAGCGAATCTCTACGCTCTTACTTTGCGAGCAAATGACTACGAAAAGATGAGTTTTAAGGGCTTGTCGCGTT
TTATTGGGATGATTGATAAGATCTTAGAAACTCAAAATGATTTGGCGAGTGTCGTCATTGCGGCTCCGAAGCATGCAGTC
CGCTTGATGACAGTTCATAAGAGCAAAGGTTTGGAATTTAAATATGTCTTTTTGCTTAATATGGATAAAGTCTTCAATCG
TAAGGATAGTAGTTCTGCTTTGATTATCAGTCGTCAAAATGGCGTCGGCATCAAGTATGTCGCGGACGTAGTGGTAGACG
CTGCTGATGAGTTAGCGCCTAATCATGTTCGCTTGTCTATTGATACTCTTCCTTATGTGCAAAATGAGCGTGAGATTCAT
TTGGCAAGTATTTCTGAGCAAATGCGTCTGCTCTATGTTGCTATGACGCGGGCAGAAAGAAAGCTGTATCTGGTTGGCAA
AGGTCGTCAAGAAAGCCTAGAGAAAAAGACCTTCCCTGCTCCTGAAAATGGTCGTTTAGCAGCCTCCATTAGGCAAACTA
TGACAAGTTTTCAAGACTGGATTTGGGCTTTACAGACAGTCTTTGAGAAAGACGATTTAGCTTTTTCAACACAATTTGTG
ACGGATAGCGATTTAACAAGTGAGAAAATAGGTCAGTTAAAGCTGAAGGAACGGATTGTCGAGGAGAACTTAGCGCACAA
TCGCCAGTCTGAGGATATTCGCAGGGCTTTGGATATTTTGGAAAATGTGGACAGGCTAAATACTCAGTATCGAGCAGCCA
TCCATTTGCCAAGTGTTCGGACACCGAGCCAAATCAAGAAATTTTATGAACCGATCATGGATACAGACGGTGTTGAGATT
ATGGAGAAAAAAACTCCAGATTTTATTGGAAAAACTTCTTTTGAACTACCTGACTTTGCTAAAAAAGCCCCTGTTACAGG
AGCGCAAATCGGTAGTGCTGTCCATGAACTGATGCAGCGTATTCCTTTAAATCAACTGCCTACAATAGCTATTTTAAAGG
AAACATTAGCTCAGGTTCAGGCAGAAGAAACTGTCAAAAAGAAGATTGATTTGCAAAAGATAGCTAGTTTCTTTGAGACA
GAGCTTGGTCAACTACTCTTAAAGCAGGCAGATAAAGTTTATCGTGAAGCTCCTTTTGCTATGTTAAAGCAAGATCAAGC
GAGCGGACAAGATTTTGTTGTCCGTGGAATTTTAGACGGTTATCTCCTACTGGCTGATCGTATCATTCTCTTTGATTATA
AGACAGATCAATATACAAATCCAAGTGAATTAGTGGAGCGCTACCAAGCGCAATTATCACTTTACGCTGAAGCTCTTCGT
CGTTCGTATGGTATTGAAAAAATAGAAAAATATCTAGTGCTGTTGAGCGGAGTTCAACTTCAAGTAGTAAAAGTAGACTA
G

Domains

Predicted by InterProScan.

PD-(D/E)XK nuclease superfamily (PDDEXK_1)

(1068-1204)

UvrD-like helicase C-terminal domain (UvrD_C)

(479-904)

UvrD/REP helicase N-terminal domain (UvrD-helicase)

(29-469)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rexA Streptococcus pneumoniae R6

60.685

100

0.607

Multiple sequence alignment