Detailed information    

insolico Bioinformatically predicted

Overview

Name   comB   Type   Regulator
Locus tag   SA27298_RS02610 Genome accession   NZ_AP018548
Coordinates   517832..519193 (-) Length   453 a.a.
NCBI ID   WP_003030685.1    Uniprot ID   -
Organism   Streptococcus anginosus strain CCUG 27928     
Function   transport of ComC (predicted from homology)   
Competence regulation

Genomic Context

Location: 512832..524193
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SA27298_RS02585 (SA27298_0533) pyrH 513255..513995 (+) 741 WP_003025453.1 UMP kinase -
  SA27298_RS02590 (SA27298_0534) frr 513999..514556 (+) 558 WP_003030687.1 ribosome recycling factor -
  SA27298_RS02595 (SA27298_0535) cvfB 514908..515762 (+) 855 WP_003030696.1 RNA-binding virulence regulatory protein CvfB -
  SA27298_RS02600 (SA27298_0536) holA 515844..516881 (+) 1038 WP_003030703.1 DNA polymerase III subunit delta -
  SA27298_RS02605 (SA27298_0537) - 516952..517557 (+) 606 WP_003025442.1 superoxide dismutase -
  SA27298_RS02610 (SA27298_0538) comB 517832..519193 (-) 1362 WP_003030685.1 bacteriocin secretion accessory protein Regulator
  SA27298_RS02615 (SA27298_0539) comA/nlmT 519204..521384 (-) 2181 WP_026248154.1 peptide cleavage/export ABC transporter Regulator
  SA27298_RS02620 (SA27298_0540) - 521629..521913 (+) 285 WP_003030694.1 bacteriocin immunity protein -
  SA27298_RS02625 - 522095..522346 (+) 252 WP_018543435.1 hypothetical protein -
  SA27298_RS02630 (SA27298_0541) - 522398..522727 (+) 330 WP_003030698.1 hypothetical protein -
  SA27298_RS02635 (SA27298_0542) - 522942..524000 (+) 1059 WP_018543436.1 serine hydrolase -

Sequence

Protein


Download         Length: 453 a.a.        Molecular weight: 50923.77 Da        Isoelectric Point: 9.5525

>NTDB_id=58790 SA27298_RS02610 WP_003030685.1 517832..519193(-) (comB) [Streptococcus anginosus strain CCUG 27928]
MNPNLFKSAEFYHRRYHNFATVLILPLVFFVLFLVLFSFIGQKEVTVKSIGEITPTKVIAMIQSTSDNTVLTNHLAENKT
VTKGELLVQYTKNMEASQQTAIETQLATYQRQKAELETLKNSLQQGTNLFTDKDEFGYANTFNNFIKQSEDLTIGISKNN
SEVSKQASLTNHTIAAIDEQMNELTKQMNDYHELYNAISSNVSNLPKSNPHQATFNLYKNEYHVKHDSSTTNQYLAQIDT
KISSLNSSIANLKIQKASAGTATTYDNSLSTKIEVLRTQFIQTTEQELRTLTTQIIDLQNQLNQATAQLQNNQLTAPETG
ILHISSALKGKALLPKGTEIAQIYPDITKTKEVLITYYVPSAYMTNLKKGQTSRLTLEKIGNHTITIIGKINSIDTSATE
TKQGNLFKITARAFVSKRDSQILKYGLQGQVTSVIAKKSFFHYYKDKLLNNVE

Nucleotide


Download         Length: 1362 bp        

>NTDB_id=58790 SA27298_RS02610 WP_003030685.1 517832..519193(-) (comB) [Streptococcus anginosus strain CCUG 27928]
ATGAATCCCAATCTGTTTAAAAGTGCAGAATTTTATCATCGAAGATACCACAACTTTGCGACCGTTCTCATTCTGCCTTT
GGTATTCTTCGTTCTATTTCTTGTTCTTTTTTCCTTTATCGGGCAAAAAGAAGTGACTGTCAAATCCATTGGCGAAATCA
CACCAACGAAAGTCATTGCCATGATTCAGTCAACCAGTGACAATACGGTTCTGACCAATCATTTAGCTGAAAATAAGACC
GTCACCAAAGGAGAGTTGTTGGTTCAATATACAAAAAATATGGAAGCTTCCCAACAAACAGCCATTGAAACGCAACTTGC
CACTTACCAGCGCCAAAAAGCAGAATTAGAAACATTAAAAAATAGTTTACAGCAGGGAACAAATCTTTTTACAGACAAAG
ATGAGTTTGGCTATGCCAACACATTTAACAATTTTATCAAACAATCAGAAGATTTAACTATCGGCATTTCAAAAAATAAT
TCCGAAGTTAGTAAACAAGCTTCTTTAACCAACCATACGATTGCTGCTATTGATGAGCAAATGAACGAATTAACAAAACA
AATGAATGACTATCATGAATTGTATAATGCCATTTCTAGCAACGTTTCAAATTTGCCAAAAAGCAATCCTCATCAAGCAA
CCTTTAACCTATATAAAAATGAATATCACGTCAAACATGATTCGTCAACTACAAATCAATACTTAGCTCAAATTGATACA
AAGATATCCAGCCTAAATTCTTCCATTGCCAATCTAAAGATTCAAAAAGCTAGTGCCGGAACTGCAACGACCTATGACAA
TAGTCTTTCGACTAAAATTGAGGTACTTCGCACACAATTTATCCAGACCACAGAGCAAGAATTAAGAACCCTTACAACTC
AGATAATCGATTTGCAAAATCAATTGAACCAAGCAACTGCTCAACTTCAAAACAATCAGTTAACTGCTCCTGAAACAGGT
ATTCTTCATATCAGCAGTGCGCTCAAAGGAAAGGCTTTACTACCAAAAGGAACGGAAATTGCTCAGATCTATCCAGATAT
CACGAAAACAAAAGAAGTTCTTATCACCTATTACGTGCCTTCAGCCTATATGACCAATTTAAAAAAGGGACAAACTTCCC
GCCTTACTCTAGAAAAAATTGGAAATCATACAATCACTATTATCGGTAAAATTAACAGCATTGACACTTCTGCTACTGAA
ACAAAACAGGGAAACCTGTTTAAAATCACTGCAAGAGCCTTTGTATCTAAAAGAGATAGCCAGATCTTGAAGTACGGTTT
GCAAGGACAAGTAACGAGTGTCATTGCGAAAAAATCATTCTTTCATTACTACAAAGATAAACTGTTAAACAACGTTGAAT
GA

Domains

Predicted by InterProScan.

HlyD family secretion protein ()

(314-425)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comB Streptococcus gordonii str. Challis substr. CH1

36.364

99.558

0.362