Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA   Type   Machinery gene
Locus tag   KPF49_RS07390 Genome accession   NZ_CP079110
Coordinates   1419011..1420384 (-) Length   457 a.a.
NCBI ID   WP_183673643.1    Uniprot ID   A0A9Q2HF58
Organism   Nosocomiicoccus ampullae strain DSM 19163     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1414011..1425384
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  KPF49_RS07365 (KPF49_07365) cysE 1414153..1414806 (-) 654 WP_183673653.1 serine O-acetyltransferase -
  KPF49_RS07370 (KPF49_07370) gltX 1415363..1416823 (-) 1461 WP_183673651.1 glutamate--tRNA ligase -
  KPF49_RS07375 (KPF49_07375) ispF 1416827..1417303 (-) 477 WP_183673649.1 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase -
  KPF49_RS07380 (KPF49_07380) ispD 1417300..1417974 (-) 675 WP_183673647.1 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase -
  KPF49_RS07385 (KPF49_07385) - 1417971..1418993 (-) 1023 WP_183673645.1 PIN/TRAM domain-containing protein -
  KPF49_RS07390 (KPF49_07390) radA 1419011..1420384 (-) 1374 WP_183673643.1 DNA repair protein RadA Machinery gene
  KPF49_RS07395 (KPF49_07395) - 1420510..1422954 (-) 2445 WP_183673641.1 ATP-dependent Clp protease ATP-binding subunit -
  KPF49_RS07400 (KPF49_07400) - 1422958..1423971 (-) 1014 WP_183673639.1 hypothetical protein -
  KPF49_RS07405 (KPF49_07405) - 1423943..1424452 (-) 510 WP_183673637.1 UvrB/UvrC motif-containing protein -
  KPF49_RS07410 (KPF49_07410) - 1424457..1424921 (-) 465 WP_183673635.1 CtsR family transcriptional regulator -

Sequence

Protein


Download         Length: 457 a.a.        Molecular weight: 50475.04 Da        Isoelectric Point: 6.8583

>NTDB_id=587857 KPF49_RS07390 WP_183673643.1 1419011..1420384(-) (radA) [Nosocomiicoccus ampullae strain DSM 19163]
MAKTKTVFECLACGYESPKWYGRCPNCGVWNQMEESIVHKEQKTKGRGTLGKVSNEKTKATQLSKISKKEAPRTHTKSGE
FDRVLGGGIVDGSLILIGGDPGIGKSTILLQTALTLAEEYNVLYVSGEESLEQIKMRADRITDDASNLHVYAETNLFYIH
DEITKLNPDFLIIDSIQTIFHPDVTSAPGSVSQVRECTQSIMNIAKGQNIATFIVGHVTKDGQIAGPRLLEHMVDTVLYF
EGDQHHTFRVLRAVKNRFGSTNEMGIFEMKYDGLKEVLNPSEIFLEERSKNTPGAAIVCAMEGTRAMLVEIQALVTPTHF
HNPRRMATGIDHNRLSLLMAVLEKSEGLLMQQHDAYIKVAGGVKLDEPAVDFAVIMAIASSFKDISVRGDMCFIGEVGLT
GEIRRVTKIEQRLQEAAKLGFNRAIIPASNLQGLAPVDIEVIGAKHLKDAMREVYKN

Nucleotide


Download         Length: 1374 bp        

>NTDB_id=587857 KPF49_RS07390 WP_183673643.1 1419011..1420384(-) (radA) [Nosocomiicoccus ampullae strain DSM 19163]
ATGGCAAAAACAAAAACAGTTTTTGAATGTTTAGCATGTGGATATGAGTCTCCAAAGTGGTACGGCAGATGCCCGAACTG
CGGGGTCTGGAACCAAATGGAAGAGTCAATTGTTCATAAAGAACAAAAAACCAAGGGCCGCGGAACGTTAGGTAAAGTGT
CTAATGAAAAAACAAAAGCGACACAATTATCTAAAATAAGTAAAAAAGAAGCACCACGTACCCATACAAAAAGTGGAGAG
TTTGACCGCGTGTTAGGCGGAGGCATCGTCGATGGCTCGCTTATTTTAATTGGTGGTGACCCGGGTATTGGGAAATCTAC
AATTTTACTCCAAACAGCACTCACACTCGCAGAAGAGTATAATGTTTTATACGTTTCTGGAGAAGAATCACTCGAGCAAA
TTAAAATGCGCGCAGATCGAATTACAGATGATGCGTCTAATTTACATGTCTATGCAGAGACGAATTTATTTTATATACAT
GATGAAATTACGAAGTTAAATCCTGACTTTTTAATTATTGACTCCATTCAAACAATTTTTCATCCAGATGTTACAAGTGC
ACCAGGAAGTGTATCTCAAGTCCGTGAGTGTACGCAGTCTATTATGAATATCGCAAAAGGGCAAAATATTGCGACATTCA
TTGTCGGGCATGTCACTAAAGATGGTCAAATTGCTGGGCCACGTTTACTTGAACATATGGTAGACACGGTCTTATATTTT
GAAGGAGATCAGCATCATACGTTTAGAGTACTAAGAGCGGTGAAGAATCGCTTTGGTTCGACAAACGAAATGGGTATTTT
TGAAATGAAGTACGACGGACTAAAAGAAGTGTTAAATCCTTCAGAGATCTTTTTAGAAGAGCGTAGTAAAAATACACCAG
GCGCTGCGATTGTTTGTGCGATGGAAGGTACACGTGCGATGCTCGTTGAAATACAAGCACTCGTTACACCGACACATTTT
CATAATCCAAGACGGATGGCCACAGGTATTGACCATAATAGATTATCTCTACTTATGGCGGTGCTTGAAAAGTCTGAAGG
ATTACTTATGCAGCAGCACGATGCGTATATAAAAGTCGCAGGTGGTGTGAAATTAGACGAACCAGCAGTGGACTTTGCGG
TTATTATGGCAATCGCGTCTAGCTTTAAAGATATTTCAGTGCGAGGAGACATGTGCTTTATTGGTGAAGTTGGATTAACT
GGAGAAATTAGACGTGTGACTAAAATTGAACAACGTCTTCAAGAAGCAGCAAAACTAGGGTTTAATCGTGCGATTATTCC
GGCGTCGAACTTACAAGGTTTAGCGCCTGTCGATATTGAAGTGATTGGTGCAAAACATTTAAAAGACGCGATGAGGGAAG
TTTATAAAAATTAA

Domains

Predicted by InterproScan.

AAA domain (AAA_25)

(84-223)

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(8-35)

Subunit ChlI of Mg-chelatase (ChlI)

(353-430)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA Bacillus subtilis subsp. subtilis str. 168

63.216

99.344

0.628
  radA Streptococcus mitis SK321

58.772

99.781

0.586
  radA Streptococcus mitis NCTC 12261

58.772

99.781

0.586
  radA Streptococcus pneumoniae Rx1

58.772

99.781

0.586
  radA Streptococcus pneumoniae D39

58.772

99.781

0.586
  radA Streptococcus pneumoniae R6

58.772

99.781

0.586
  radA Streptococcus pneumoniae TIGR4

58.772

99.781

0.586