Detailed information    

insolico Bioinformatically predicted

Overview

Name   ceuB   Type   Machinery gene
Locus tag   KPF49_RS01230 Genome accession   NZ_CP079110
Coordinates   231694..232662 (+) Length   322 a.a.
NCBI ID   WP_183673251.1    Uniprot ID   A0A9Q2HER5
Organism   Nosocomiicoccus ampullae strain DSM 19163     
Function   DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 226694..237662
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  KPF49_RS01210 (KPF49_01210) recQ 227237..229003 (+) 1767 WP_183673585.1 DNA helicase RecQ -
  KPF49_RS01215 (KPF49_01215) - 229388..230257 (-) 870 WP_219490129.1 DMT family transporter -
  KPF49_RS01220 (KPF49_01220) - 230432..230836 (+) 405 WP_183673246.1 FixH family protein -
  KPF49_RS01225 (KPF49_01225) - 230917..231582 (+) 666 WP_183673249.1 SDR family NAD(P)-dependent oxidoreductase -
  KPF49_RS01230 (KPF49_01230) ceuB 231694..232662 (+) 969 WP_183673251.1 ABC transporter permease Machinery gene
  KPF49_RS01235 (KPF49_01235) - 232652..233614 (+) 963 WP_183673253.1 iron chelate uptake ABC transporter family permease subunit -
  KPF49_RS01240 (KPF49_01240) - 233611..234408 (+) 798 WP_183673255.1 ABC transporter ATP-binding protein -
  KPF49_RS01245 (KPF49_01245) - 234487..235545 (+) 1059 WP_183673257.1 siderophore ABC transporter substrate-binding protein -
  KPF49_RS01250 (KPF49_01250) murB 235564..236487 (-) 924 WP_183673259.1 UDP-N-acetylmuramate dehydrogenase -
  KPF49_RS01255 (KPF49_01255) - 236587..237480 (+) 894 WP_183673261.1 EMYY motif lipoprotein -

Sequence

Protein


Download         Length: 322 a.a.        Molecular weight: 35393.71 Da        Isoelectric Point: 10.4367

>NTDB_id=587843 KPF49_RS01230 WP_183673251.1 231694..232662(+) (ceuB) [Nosocomiicoccus ampullae strain DSM 19163]
MAKKLFRLDILIIVLIFTSILSIFVGVSSLPLSDIFNLSDQQKTVLLHSRIPRTVSIIIAGAALSTCGLIMQQLTRNKFV
SPTTAGTMEWAQLGILIGMIFFPAASMLMRLSFATALALIGTLIFMQIITRIKFKDIIFVPLIGIMLGGVVSSVGTFLAL
RTNNLQSISTWMHGSFSTLVTGRYEILYISIPLFILAIFYAHQFTVAGMGEDFSKNLGLNYRRVVNIGLFITAAITAIVV
VTVGMLPFLGLIVPNIVSIFRGDHLRSTIFLTATLGGIFVMICDIIGRVIIYPYEVSVGLVIAVFGSAIFLFMIYRRVKY
AE

Nucleotide


Download         Length: 969 bp        

>NTDB_id=587843 KPF49_RS01230 WP_183673251.1 231694..232662(+) (ceuB) [Nosocomiicoccus ampullae strain DSM 19163]
ATGGCAAAAAAATTATTTCGACTAGACATATTAATAATCGTGCTCATATTCACATCTATACTTTCAATATTTGTCGGTGT
GAGTAGTTTGCCGCTGAGTGACATATTTAATTTAAGCGATCAACAAAAAACAGTTTTATTACATAGCAGAATCCCGCGTA
CTGTGTCGATTATTATTGCAGGAGCGGCGCTTTCGACGTGTGGTCTTATTATGCAACAACTCACGCGTAACAAATTCGTA
TCACCAACGACAGCAGGAACGATGGAGTGGGCACAGCTTGGTATTTTAATCGGTATGATATTCTTCCCAGCTGCGAGCAT
GTTAATGAGATTATCATTCGCGACAGCACTCGCATTAATAGGGACTTTAATTTTTATGCAAATTATTACACGTATTAAAT
TTAAAGATATCATTTTTGTACCACTGATCGGTATTATGCTTGGTGGCGTTGTTTCGAGTGTTGGGACATTTTTAGCACTC
CGCACGAATAATTTACAATCTATTTCAACTTGGATGCATGGTAGTTTCTCTACACTTGTAACTGGACGATATGAAATTTT
ATATATTAGTATTCCGTTGTTTATATTAGCAATTTTTTATGCACATCAATTTACAGTTGCAGGTATGGGAGAAGATTTCT
CTAAAAACTTAGGCTTAAATTACAGAAGAGTCGTTAATATTGGCTTATTTATTACTGCAGCGATTACAGCAATTGTCGTT
GTAACCGTTGGTATGCTTCCGTTTTTAGGGTTAATTGTTCCGAATATCGTTTCGATATTTAGAGGAGATCATCTAAGGAG
TACGATTTTCTTAACCGCAACACTTGGTGGGATATTCGTAATGATATGTGACATTATTGGTCGTGTTATCATTTACCCGT
ACGAAGTGTCAGTTGGTCTTGTCATTGCCGTATTCGGTAGTGCAATCTTCCTATTTATGATTTATAGGAGGGTGAAATAT
GCGGAGTAA

Domains

Predicted by InterproScan.

FecCD transport family (FecCD)

(15-316)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ceuB Campylobacter jejuni subsp. jejuni 81-176

48.589

99.068

0.481