Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA   Type   Machinery gene
Locus tag   KPF52_RS08175 Genome accession   NZ_CP079109
Coordinates   1541887..1543260 (-) Length   457 a.a.
NCBI ID   WP_219522963.1    Uniprot ID   -
Organism   Nosocomiicoccus ampullae strain 19-00310     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1536887..1548260
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  KPF52_RS08150 (KPF52_08155) cysE 1537028..1537681 (-) 654 WP_219522959.1 serine O-acetyltransferase -
  KPF52_RS08155 (KPF52_08160) gltX 1538239..1539699 (-) 1461 WP_219522960.1 glutamate--tRNA ligase -
  KPF52_RS08160 (KPF52_08165) ispF 1539703..1540179 (-) 477 WP_183673649.1 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase -
  KPF52_RS08165 (KPF52_08170) ispD 1540176..1540850 (-) 675 WP_219522961.1 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase -
  KPF52_RS08170 (KPF52_08175) - 1540847..1541869 (-) 1023 WP_219522962.1 PIN/TRAM domain-containing protein -
  KPF52_RS08175 (KPF52_08180) radA 1541887..1543260 (-) 1374 WP_219522963.1 DNA repair protein RadA Machinery gene
  KPF52_RS08180 (KPF52_08185) - 1543386..1545830 (-) 2445 WP_183673641.1 ATP-dependent Clp protease ATP-binding subunit -
  KPF52_RS08185 (KPF52_08190) - 1545834..1546847 (-) 1014 WP_219522964.1 hypothetical protein -
  KPF52_RS08190 (KPF52_08195) - 1546819..1547328 (-) 510 WP_219522965.1 UvrB/UvrC motif-containing protein -
  KPF52_RS08195 (KPF52_08200) - 1547333..1547797 (-) 465 WP_183673635.1 CtsR family transcriptional regulator -

Sequence

Protein


Download         Length: 457 a.a.        Molecular weight: 50428.97 Da        Isoelectric Point: 6.8583

>NTDB_id=587835 KPF52_RS08175 WP_219522963.1 1541887..1543260(-) (radA) [Nosocomiicoccus ampullae strain 19-00310]
MAKTKTVFECLACGYESPKWYGRCPNCGAWNQMEESIVHKEQKTKGRGTLGKVSNEKTKATQLSKISKKEAPRTHTKSGE
FDRVLGGGIVDGSLILIGGDPGIGKSTILLQTALTLAEEYNVLYVSGEESLEQIKMRADRITDDASNLHVYAETNLFYIH
DEITKLNPDFLIIDSIQTIFHPDVTSAPGSVSQVRECTQSIMNIAKGQNIATFIVGHVTKDGQIAGPRLLEHMVDTVLYF
EGDQHHTFRVLRAVKNRFGSTNEMGIFEMKYDGLKEVLNPSEIFLEERSKNTPGSAIVCAMEGTRAMLVEIQALVTPTHF
HNPRRMATGIDHNRLSLLMAVLEKSEGLLMQQHDAYIKVAGGVKLDEPAVDLAVIMAIASSFKDISVRGDMCFIGEVGLT
GEIRRVTKIEQRLQEAAKLGFNRAIIPASNLQGLAPVDIEVIGAKHLKDAMREVYKN

Nucleotide


Download         Length: 1374 bp        

>NTDB_id=587835 KPF52_RS08175 WP_219522963.1 1541887..1543260(-) (radA) [Nosocomiicoccus ampullae strain 19-00310]
ATGGCAAAAACAAAAACAGTTTTTGAATGTTTAGCATGTGGATATGAGTCTCCAAAGTGGTACGGCAGATGCCCGAACTG
CGGAGCCTGGAACCAAATGGAAGAGTCAATTGTTCATAAAGAACAAAAAACTAAAGGCCGCGGAACGTTAGGTAAAGTGT
CTAATGAAAAAACAAAAGCGACACAATTATCTAAAATAAGTAAAAAAGAAGCACCACGTACCCATACAAAAAGTGGAGAG
TTTGACCGCGTGTTAGGCGGAGGCATCGTCGATGGCTCGCTGATTTTAATTGGTGGTGACCCAGGCATTGGGAAATCTAC
AATTTTACTCCAAACAGCACTCACACTCGCAGAAGAGTATAATGTTTTATACGTTTCTGGAGAAGAATCACTCGAGCAAA
TTAAAATGCGCGCAGATCGAATTACAGATGATGCGTCTAATTTACATGTCTATGCAGAGACGAATTTATTTTATATACAT
GATGAAATTACGAAGTTAAATCCTGACTTTTTAATTATTGACTCCATTCAAACAATTTTTCATCCAGATGTTACAAGTGC
ACCAGGAAGTGTATCTCAAGTCCGTGAGTGTACGCAGTCTATTATGAATATCGCAAAAGGGCAAAATATTGCGACATTCA
TCGTCGGGCATGTCACTAAAGATGGTCAAATCGCTGGACCACGTTTACTTGAGCATATGGTAGACACGGTCTTATATTTT
GAAGGAGATCAGCATCATACGTTTAGAGTACTAAGAGCGGTGAAGAATCGCTTTGGTTCGACAAACGAAATGGGTATTTT
TGAAATGAAGTACGACGGACTAAAAGAAGTGTTAAATCCTTCAGAAATCTTTTTAGAAGAGCGTAGTAAAAATACACCAG
GCTCTGCGATTGTTTGTGCGATGGAAGGTACACGTGCGATGCTCGTTGAAATACAAGCACTCGTCACACCGACACATTTT
CATAATCCAAGACGTATGGCCACAGGTATTGATCATAATAGACTATCTCTACTTATGGCAGTACTTGAAAAGTCTGAAGG
ATTACTTATGCAGCAGCACGATGCGTATATAAAAGTCGCAGGTGGTGTGAAATTAGACGAACCAGCAGTGGACCTTGCGG
TTATTATGGCAATCGCGTCTAGCTTTAAAGATATTTCAGTTAGAGGAGACATGTGCTTTATCGGTGAAGTTGGATTAACT
GGAGAAATTAGACGTGTGACTAAAATCGAACAACGCCTTCAAGAAGCAGCGAAACTAGGGTTTAATCGTGCGATTATTCC
AGCGTCGAACTTACAAGGTTTAGCACCTGTCGATATTGAGGTGATTGGCGCAAAACATTTAAAAGACGCGATGAGGGAAG
TTTATAAAAATTAA

Domains

Predicted by InterproScan.

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(8-35)

Subunit ChlI of Mg-chelatase (ChlI)

(352-430)

AAA domain (AAA_25)

(84-223)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA Bacillus subtilis subsp. subtilis str. 168

63.877

99.344

0.635
  radA Streptococcus mitis SK321

59.211

99.781

0.591
  radA Streptococcus mitis NCTC 12261

59.211

99.781

0.591
  radA Streptococcus pneumoniae Rx1

59.211

99.781

0.591
  radA Streptococcus pneumoniae D39

59.211

99.781

0.591
  radA Streptococcus pneumoniae R6

59.211

99.781

0.591
  radA Streptococcus pneumoniae TIGR4

59.211

99.781

0.591