Detailed information    

insolico Bioinformatically predicted

Overview

Name   ceuB   Type   Machinery gene
Locus tag   KPF52_RS01430 Genome accession   NZ_CP079109
Coordinates   266352..267320 (+) Length   322 a.a.
NCBI ID   WP_219523258.1    Uniprot ID   -
Organism   Nosocomiicoccus ampullae strain 19-00310     
Function   DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 261352..272320
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  KPF52_RS01410 (KPF52_01410) recQ 261888..263654 (+) 1767 WP_219523663.1 DNA helicase RecQ -
  KPF52_RS01415 (KPF52_01415) - 264046..264915 (-) 870 WP_219490129.1 DMT family transporter -
  KPF52_RS01420 (KPF52_01420) - 265090..265494 (+) 405 WP_219523256.1 FixH family protein -
  KPF52_RS01425 (KPF52_01425) - 265575..266240 (+) 666 WP_219523257.1 SDR family NAD(P)-dependent oxidoreductase -
  KPF52_RS01430 (KPF52_01430) ceuB 266352..267320 (+) 969 WP_219523258.1 ABC transporter permease Machinery gene
  KPF52_RS01435 (KPF52_01435) - 267310..268272 (+) 963 WP_183673253.1 iron chelate uptake ABC transporter family permease subunit -
  KPF52_RS01440 (KPF52_01440) - 268269..269066 (+) 798 WP_183673255.1 ABC transporter ATP-binding protein -
  KPF52_RS01445 (KPF52_01445) - 269145..270203 (+) 1059 WP_183673257.1 siderophore ABC transporter substrate-binding protein -
  KPF52_RS01450 (KPF52_01450) murB 270222..271145 (-) 924 WP_219523259.1 UDP-N-acetylmuramate dehydrogenase -
  KPF52_RS01455 (KPF52_01455) - 271245..272138 (+) 894 WP_219523260.1 EMYY motif lipoprotein -

Sequence

Protein


Download         Length: 322 a.a.        Molecular weight: 35365.70 Da        Isoelectric Point: 10.4028

>NTDB_id=587823 KPF52_RS01430 WP_219523258.1 266352..267320(+) (ceuB) [Nosocomiicoccus ampullae strain 19-00310]
MAKKLFRLDILIIVLIFTSILSIFVGVSSLPLSDIFNLSDQQKTVLLHSRIPRTVSIIIAGAALSTCGLIMQQLTRNKFV
SPTTAGTMEWAQLGILIGMIFFPAASMLMRLSFATALALIGTLIFMQIITRIKFKDIIFVPLIGIMLGGVVSSVGTFLAL
RTNNLQSISTWMHGSFSTLVTGRYEILYISIPLFILAIFYAHQFTVAGMGEDFSKNLGLNYKRVVNIGLFITAAITAIVV
VTVGMLPFLGLIVPNIVSIFRGDHLRSTIFLTATLGGIFVMICDIIGRVIIYPYEVSVGLVIAVFGSAIFLFMIYRRVKY
AE

Nucleotide


Download         Length: 969 bp        

>NTDB_id=587823 KPF52_RS01430 WP_219523258.1 266352..267320(+) (ceuB) [Nosocomiicoccus ampullae strain 19-00310]
ATGGCAAAAAAATTATTTCGACTAGACATATTAATAATCGTGCTCATATTCACATCTATACTTTCAATATTTGTCGGTGT
GAGTAGTTTGCCGCTGAGTGACATATTTAATTTAAGCGATCAACAAAAAACAGTTTTATTACATAGCAGAATCCCGCGTA
CTGTGTCGATTATTATTGCAGGAGCGGCGCTTTCGACGTGTGGGCTTATTATGCAACAACTCACGCGTAACAAATTCGTA
TCACCAACGACAGCAGGAACGATGGAGTGGGCACAGCTTGGTATTTTAATCGGTATGATATTCTTCCCAGCTGCGAGCAT
GTTAATGAGATTATCATTCGCGACAGCACTCGCATTAATAGGGACTTTAATTTTTATGCAAATTATTACACGTATTAAAT
TTAAAGATATCATTTTTGTACCACTGATCGGTATTATGCTTGGTGGCGTTGTTTCGAGTGTTGGGACATTTTTAGCACTC
CGCACGAATAATTTACAATCTATTTCAACTTGGATGCATGGTAGTTTCTCTACACTTGTAACTGGACGATATGAAATTTT
ATATATTAGTATTCCGCTATTTATATTAGCAATTTTTTATGCACATCAATTTACAGTTGCAGGTATGGGAGAAGATTTCT
CTAAAAACTTAGGCTTAAATTACAAAAGAGTCGTTAATATTGGCTTATTTATTACTGCAGCGATTACAGCAATTGTCGTT
GTAACCGTTGGTATGCTTCCGTTTTTAGGGTTAATTGTTCCGAATATCGTTTCGATATTTAGAGGAGATCATCTAAGGAG
TACGATTTTCTTAACCGCAACACTTGGTGGGATTTTCGTAATGATATGTGACATTATTGGTCGTGTTATCATTTACCCGT
ACGAAGTGTCAGTTGGTCTTGTTATTGCCGTATTCGGTAGTGCAATCTTCCTATTTATGATTTATAGGAGGGTGAAATAT
GCGGAGTAA

Domains

Predicted by InterproScan.

FecCD transport family (FecCD)

(15-316)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ceuB Campylobacter jejuni subsp. jejuni 81-176

48.589

99.068

0.481