Detailed information    

insolico Bioinformatically predicted

Overview

Name   recN   Type   Machinery gene
Locus tag   KUH03_RS45510 Genome accession   NZ_CP079104
Coordinates   938352..938483 (-) Length   43 a.a.
NCBI ID   WP_306429500.1    Uniprot ID   -
Organism   Sphingobacterium sp. E70     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 933352..943483
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  KUH03_RS06730 (KUH03_06395) - 933643..936166 (+) 2524 Protein_1383 ATP-dependent Clp protease ATP-binding subunit -
  KUH03_RS06735 (KUH03_06400) - 936302..936649 (+) 348 WP_257092114.1 hypothetical protein -
  KUH03_RS45495 - 936825..937172 (-) 348 WP_306429497.1 hypothetical protein -
  KUH03_RS45500 - 937172..937693 (-) 522 WP_306429498.1 hypothetical protein -
  KUH03_RS45505 - 937684..938301 (-) 618 WP_306429499.1 hypothetical protein -
  KUH03_RS45510 recN 938352..938483 (-) 132 WP_306429500.1 AAA family ATPase Machinery gene
  KUH03_RS48225 - 939143..939250 (+) 108 WP_373564787.1 hypothetical protein -
  KUH03_RS45515 - 939298..939423 (+) 126 WP_306429501.1 hypothetical protein -
  KUH03_RS06750 (KUH03_06415) - 939613..940026 (+) 414 WP_120259976.1 hypothetical protein -
  KUH03_RS06755 (KUH03_06420) - 940293..940553 (-) 261 WP_077438329.1 hypothetical protein -
  KUH03_RS06760 (KUH03_06425) - 940931..941422 (-) 492 WP_257092115.1 DUF1016 domain-containing protein -
  KUH03_RS06765 (KUH03_06430) - 941404..941943 (-) 540 WP_257092116.1 DUF1016 N-terminal domain-containing protein -
  KUH03_RS06770 (KUH03_06435) - 942348..942500 (+) 153 WP_257092117.1 hypothetical protein -
  KUH03_RS06775 (KUH03_06440) - 942599..942970 (+) 372 WP_257092118.1 hypothetical protein -

Sequence

Protein


Download         Length: 43 a.a.        Molecular weight: 4594.38 Da        Isoelectric Point: 4.5381

>NTDB_id=587785 KUH03_RS45510 WP_306429500.1 938352..938483(-) (recN) [Sphingobacterium sp. E70]
MLDTLHIKNYALINVLEIQFDSGLNMITGETGAGKSIIMGALS

Nucleotide


Download         Length: 132 bp        

>NTDB_id=587785 KUH03_RS45510 WP_306429500.1 938352..938483(-) (recN) [Sphingobacterium sp. E70]
ATGCTAGATACCTTACATATTAAGAATTATGCCCTGATCAATGTATTGGAAATCCAATTTGATAGTGGCTTGAATATGAT
TACTGGGGAGACTGGAGCGGGTAAATCCATTATTATGGGAGCACTTTCCTGA

Domains

Predicted by InterproScan.

AAA domain (AAA_23)

(5-42)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recN Bacillus subtilis subsp. subtilis str. 168

58.14

100

0.581